Oryzias latipes (Japanese medaka): 101166992
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Entry
101166992 CDS
T02443
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101166992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101166992
03009 Ribosome biogenesis [BR:
ola03009
]
101166992
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101166992
Spliceosome [BR:
ola03041
]
Complex A
U2 snRNP components
U2 related factors
101166992
Complex B
101166992
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101166992
Ribosome biogenesis [BR:
ola03009
]
Eukaryotic type
90S particles
Helicases
101166992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
101166992
NCBI-ProteinID:
XP_004079718
UniProt:
A0A3B3HY33
LinkDB
All DBs
Position
18:complement(11111431..11144865)
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AA seq
734 aa
AA seq
DB search
MRRDKDRYRERDDRHRDRDRERERDRDMNSPRVASGPPVASFEYFKQSPIQQQINPFTNL
PHTPRYYEILKKRLQLPVWEYRERFTEILMRNQSFVLVGETGSGKTTQIPQWCVDMVRSL
QGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDGML
LREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEIVRQRTDLKVIVMSATLDAGKFQ
VYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQLHMCEEEEGDVLLFLTGQEE
IDEACKRIKREVEDLGPEVGDMKIIPLYSTLPPQQQQRIFEPSPPNKPNGAIGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAVSKASAQQRAGRAGRTRPGKC
FRLYTEKAYKTEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNFLAALNDDGDLTELGAMMAEFPLDPQLAKMVIASCEYNCSNEILTITAMLSVPQCFV
RPTEAKKVADESKLRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVR
QQLSRIMERFNLPRRSTEFSSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDVKPEWLMRIAPQYYDLGNFPQCEARRQLE
RIFAKLSSKEYTQY
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtgacaaggaccgctatcgggaaagggatgaccggcatcgagacagggacagg
gagcgggagcgtgacagggacatgaattctccgagagtggcgagcggcccacctgtcgca
agttttgaatattttaagcaatctcccattcagcagcagataaacccttttaccaacctg
cctcacacgccacgctactatgagatcctgaagaagcgcctgcagctgccggtctgggag
tacagggagaggttcaccgagatcctgatgcggaaccagtcttttgtgctcgtgggtgag
acgggctctgggaagacaacacagatccctcagtggtgtgtcgacatggtgcggtcactc
caaggaccaaaaagagccgtggcgtgcacccagcccaggagggtggcggccatgagcgtg
gctcagagggttgcagatgagatggatgtcatgttgggtcaagaggtgggctactccatc
agatttgaggactgcagctctgccaagactgtgctcaagtacatgacagatggaatgctg
ctgcgggaggctatgaatgatcccctgctggagcgctatggtgtcatcattttggatgag
gcccacgaacgcacattagcaacagacatcctcatgggcgtcctcaaagaaatagtccgc
cagaggaccgacctaaaggtcatcgtcatgagcgcaacacttgatgcaggcaagtttcaa
gtgtactttgacaactgcccactgttgaccatccctggacgcacgcaccccgtggagatt
ttctacacgccagaaccagagcgagactacctggaggcggccatccgcacagtgatccag
ctccacatgtgtgaggaggaggagggtgacgttctgcttttcctcactggacaagaggaa
attgacgaagcctgcaagcgaattaagagggaggttgaggacctggggcctgaagtgggc
gatatgaaaatcatccccctgtactcaacattgcctccacagcagcagcagagaattttt
gagccatccccacccaataaaccaaatggcgccattggaagaaaggtcgtcgtgtcaaca
aacatcgctgaaacgtccctgaccatagacggtgtggtgtttgtaattgatcctggattt
gccaagcaaaaggtgtataatccacgtatcagagtggaatcccttttagtcacagccgtc
agcaaagcctcagcccagcagagggcaggtcgtgctgggcgaacacggccgggaaaatgt
tttcgcctttacacagagaaggcttacaagacagaaatgcaggacaatacctatccagag
atcctgaggtctaatctcggtactgtggtgctgcagttgaaaaaactgggtattgatgac
ctggtgcatttcgacttcatggaccctccagccccagagaccctgatgcgagccctggag
ttgctgaacttcctggcggccctcaacgatgacggtgaccttactgagctaggcgccatg
atggcagagttccccctggacccccagctcgccaagatggtcatcgccagctgtgaatac
aactgttccaatgagattctcaccatcactgccatgttgtcagtcccacagtgcttcgta
cgacccacggaggccaagaaggtggcagacgagtccaagctgcgcttcgcccacatcgat
ggagaccacctgacgctgcttaacgtctatcacgcctttaaacaaaatcatgaatccact
cagtggtgctacgataactttgtgaactaccgctcgctgatgtctgccgacaacgtgcgc
cagcagctgtccaggatcatggagcgcttcaacctgccgcgaagaagcaccgagttcagc
agcagagactattacatcaacatccgccgagcgctggtcactggctttttcatgcaggtt
gctcatctggagcgcacgggccattacctgaccgtgaaggacaaccaggtggtgcagctg
cacccttccaccgtgctggaccacaagcccgagtgggtgctgtacaacgagtttgtgctc
accaccaagaattacatccgcacgtgcaccgacgtcaaaccagagtggctgatgagaatt
gcgcctcagtactacgacttgggcaacttcccccagtgtgaggccaggcggcagctggag
cgcatttttgcgaagctctcgtctaaggaatacactcagtattaa
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