KEGG   Oryzias latipes (Japanese medaka): 101167295
Entry
101167295         CDS       T02443                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03420  Nucleotide excision repair
ola04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    101167295 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    101167295 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ola04121]
    101167295 (ercc8)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101167295 (ercc8)
Ubiquitin system [BR:ola04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     101167295 (ercc8)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      101167295 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 WDR55 Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st Beta-prop_SPT8 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_LRRK2 Beta-prop_WDR75_2nd Beta-prop_SCAP
Other DBs
NCBI-GeneID: 101167295
NCBI-ProteinID: XP_020561476
LinkDB
Position
9:9274583..9285484
AA seq 405 aa
MLGFLTARRAGLDDPLRLRRAESTRRVLNLKLNPDRDVDRIHGNGINSIDIETIEGRYML
SGGADGVIVIYDLENYSGKPQYTCKAVCTVGRSNRHVHKFSVETVLWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFESNIYNHHLSPIARKHSLIAVGTKNPKIQLCDLKSGSKIH
VLQGHKAEVLSVRWSPRYEHILATASADSKVKVWDVRRASGSLFSLDQDNGDKSKSSSEA
VNTAHNGRVNGLSFTSDGLFLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKGLQFTV
SQGCSPEFVFVPCGSSVAVYVLHTGELVTMLRGHYNNVDCCKFHPDHQELYSGGKDGNIL
AWVPVLRASDMEEESDQKNKDVLQGAADSSAGNRALQDAWSSDED
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgttaggatttttgacggcaaggcgggcagggctggatgatcctttgagactgagacga
gcagaatcaacgagaagggttctcaatctgaaattaaatcctgacagggatgtggatcgg
atccatgggaatggcattaatagcatcgatattgaaacaatcgagggaagatacatgtta
tctggcggtgctgatggagtgattgtcatctatgacctggaaaactacagcgggaagcca
caatacacctgcaaggcggtctgcacagttggccggtccaaccgacatgttcacaagttc
agtgtagaaacagttctttggtatccttatgacacggggatgtttgtctccagttccttc
gacaagaccatgaaggtttgggatactgagactttaaagcccgctgaagtgtttgagttt
gagagtaatatctacaatcaccacctgtccccaatcgccaggaagcacagtctcattgca
gttggcaccaaaaaccctaaaatccagctatgtgacttgaagtctggctcaaaaattcat
gttcttcaaggtcacaaagcagaagtactgtccgtgcgatggtcgccgagatatgagcac
attttagccactgccagtgcagacagcaaagtaaaagtgtgggatgttcgtcgagcatct
ggcagcctcttctctcttgaccaggacaatggagacaagtccaaatcctcctcagaagca
gtgaacacggcacataatggcagagtgaatggtctgtccttcacaagtgatggcctcttc
ctcttaactactggaactgatgacagaatgaggttatggaatagtgctactggggaaaat
acattggtgaattatgggaaagtttgcaacgagagccgtaaagggctgcagttcacagtg
tctcagggctgcagcccagagttcgtgttcgtgccgtgtggcagctcagtggcagtgtat
gtcctccacacaggagagctggtcactatgctcaggggtcactacaacaatgttgactgc
tgcaagttccatccagaccaccaggagctgtacagtggaggcaaagacggtaacatacta
gcatgggttcctgtacttcgggcttcagatatggaagaagagtctgaccaaaagaataag
gatgttttacagggtgccgctgattcgtctgcagggaatcgtgccttacaggatgcgtgg
agcagtgatgaagactaa

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