Oryzias latipes (Japanese medaka): 101167450
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Entry
101167450 CDS
T02443
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101167450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101167450
03036 Chromosome and associated proteins [BR:
ola03036
]
101167450
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
101167450
Coactivators
SAGA/TFTC/STAGA complex
101167450
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
101167450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
ADPRTs_Tse2
Motif
Other DBs
NCBI-GeneID:
101167450
NCBI-ProteinID:
XP_011474025
LinkDB
All DBs
Position
6:5703556..5724055
Genome browser
AA seq
908 aa
AA seq
DB search
MAGARDPLEDMLLTEVDEAAVSDLLGDLESRLGDGSAVSFSARKRDAAAAQLSGKGRDQA
GSTEPLQGRPNAGSSRAAGTGEPPPSPFSAPIAGGGLRAERTTSPDAPSGPGPVTGSSQP
ADSFHRAAAPGAVPADEAAQTPPSGLQTLKGSVKLPNSAAVTEPASSGIVTQTSPVPQTT
ACPPLTTPQRNHIPATSLGHNGVDPKGAPGPAASSSASQVVNHSIPLMQPKVPPPAAAVQ
PEVSQPPGVKPAVNGLVQPAAATPARTPLPGGPTSIQQQKPALMAGVTRPVAPQLAVRPQ
QQQATIQLPSGFTIPPGMVLVRTETGQLVLVPQQVLAQAQVKAQQGQTAVAQRQMTPTAT
SPLRVNAATTVLQVPAPHQTIRLASPVQTRMAQSPSTTTVQGLTVAPGSSVVSVKMPTAQ
KTQTGMVAGGVTPVEPPVTAGAPPASAPTASRVTVLSQEMQENVKKCKNFLATLIKLASH
NSPSPETAKNVKALVQDLLDAKIEPEEFTSRLQADLKSSPQPYLIPFLKKSLPALRQTLF
SSQQFLTTAPPVTPAPAPAAPGSIAATAIRPRLPTAATGGAVRLNPPMTNTTALAAARPG
AQVLQTRSPVVIGHQLRHPVTLLRGPLCTAGKSPVSLAASANQKKQCDPGGGTFRDDDDI
NDVASMAGVNLNEENARILATSSEIVGTKIRSCKDEFFLPADVLHRRILDTARKLGVTEV
PADVVNVVSHATQFRLRSLLEKVSVVAQHRADAVKDEDLYEQTSDVRAQLRFFEQLERIE
KQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGP
RKKRKLDSVGGANTGSEVSSGLGSLGSPSPRQQLRQRITRVNLRDFILCLEQDRSTARSM
ALYKALLK
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcccgcgacccgctggaggacatgctcctgacggaggtggacgaggcggcc
gtcagcgacctgctgggggacttggagtcccggctgggtgacggctccgcagtctccttc
tctgccaggaagcgggacgcggccgccgcacaactctcaggaaaagggcgggatcaagcg
ggatccacggagccgctacaagggcgtccgaacgcgggctcgagccgggcggcgggcacc
ggtgagccgccgccttcccccttttccgctcctatcgcgggagggggcctgcgggcggaa
cgaacgacttctcccgatgctccgtccggaccgggacctgtaacggggagctcgcagccc
gccgatagcttccaccgagccgcagctcccggcgcagtcccagcggatgaggcggcacag
acacccccctccgggttgcagactttaaagggttccgtgaagttaccgaactcagccgca
gtgacggaacccgcgagttccggtatcgtcacccagacctcaccggtacctcagaccacg
gcgtgcccccccttaacaaccccacagcgtaaccacatcccggcgaccagcttgggccac
aacggagtggacccgaaaggcgctcccggtcccgccgcctccagctctgcttctcaggtt
gtgaaccacagcattcctctgatgcagcctaaggtcccccctcccgcagctgcagtccag
cccgaagttagccagccccccggagtcaagcctgctgtgaatggactggtgcagccagca
gcggcgacccccgcgaggacccctcttcccgggggccccacctccatccagcagcagaaa
cctgcactgatggctggtgtgacccggcccgttgccccccagctggctgttcggccccag
cagcagcaggccaccatccagctgccttctggcttcaccatccctccaggtatggttttg
gtccgaacggaaactggtcagctggtcttggtcccacagcaggttctggctcaggctcaa
gtcaaggcgcagcagggtcagacggcggttgctcagagacagatgactcccacagcaact
tccccccttcgggtcaacgccgccaccacagtcctgcaggtgccagccccccatcagacc
atccgcctggcctccccagttcagactaggatggctcagtctccgtctaccaccactgtt
cagggcctcacggtggcgccgggcagttctgtggtgtctgtgaagatgcccacggctcag
aagacccagaccggaatggtggcaggaggtgtcactccagtcgagccccctgtgactgca
ggtgccccccctgcctctgcacccaccgccagcagagtcacagttctatcgcaggaaatg
caggagaatgtaaagaagtgcaagaacttccttgcaactctcatcaagctggcatcccat
aattccccctcccctgagactgctaagaatgtgaaggccttggttcaggatctgcttgat
gcaaagattgagccagaagagtttacatcgcggctgcaggcagatctgaagtcctccccg
cagccctacctcatcccattcctcaagaaaagccttcccgccctgaggcagacgttgttc
agcagtcaacagtttctgaccacggctccacctgttacccccgcccccgcccctgctgct
ccaggatctatagctgcaactgccatcagaccacggctgcccactgctgctacaggcggc
gctgtccggctgaacccgcccatgacaaacaccacagctctggcagcagctcgccccgga
gctcaggtgctgcagacccgctcacctgtggtcatcggtcatcagctcagacatccagtg
accctcctgcgaggacctctgtgcacggccggcaaaagtcctgtcagcctggcagcttca
gccaatcagaaaaagcagtgtgatcctgggggtgggaccttcagagatgatgacgacatc
aatgacgtggcatcgatggctggggtcaacctgaatgaggagaacgctcgtatcttagca
accagctcagagatcgtgggcacaaagatccgttcctgtaaagacgagttcttcctgccc
gctgacgtgctgcaccgccgtatcctggacacagcgaggaagctgggcgtcaccgaggtg
ccggcggacgtggtgaacgtggtctcccacgccacccagttccggctgcgctcgctgctg
gagaaggtttctgtggtggcccagcaccgcgccgacgccgtgaaggatgaggatctgtac
gagcagacgtccgacgtgcgcgctcagctgcgtttcttcgagcagctggagcggatagag
aagcagcgcaaagacgagcaggagcgcgagatgctgctgaaggcggccaagagccgtgcc
cgtcaggaggatccagagcaggcccggctcaagcagaaggccaaggagatgcagcagcag
gagctggctcagatgagacagagagacgcgaacctcacagctctcgccgccattggacct
cgtaagaaacgcaagctggacagtgtgggtggagctaacactggtagtgaggtgtcctca
ggtttgggctcgttaggcagcccctccccccgccagcagcttcgtcagcggatcactcgg
gtaaacctcagggacttcatcctgtgtctggagcaggaccgcagcacagctcgctccatg
gcgctctacaaggctctgttgaagtga
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