Oryzias latipes (Japanese medaka): 101167578
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Entry
101167578 CDS
T02443
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101167578
03015 mRNA surveillance pathway
101167578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101167578
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101167578
mRNA cycle factors
P-body specific factors
101167578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
101167578
NCBI-ProteinID:
XP_011487598
UniProt:
H2M5F7
LinkDB
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Position
21:complement(7271792..7280759)
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AA seq
466 aa
AA seq
DB search
MRSEKDQMAVDTEKSVEIQFKDIPREQESPGCHLKQKEEKKEVFSKVVIRRLPPNLSKEQ
LEEQLSPLPSYDYFEFFSADQSLYPHLFSRAYINFKNTEDIVLFRDRFDGYVFIDNKGQE
YPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYSCDEEKSMANPETLLGEIE
AKTKELIAKRTTPLLEYIKIKKIEKQRIREEKREERRRRELEKKRLREEEKRKRREEERR
KRKEADKQKKLSDKDVKIKLLKKTDRDDNPDSDRMKDKSDTGEAERGRWEKAGGQMKSKE
SKEKGQHESEKEQRDQHGRRQRDKDYRGKDEERKRQQHHYDFEKFMRRKDETKWGKGYCQ
DRAKKEGHHHGFSYCADGGDKLGKEEREDLSNRKERLRNKVSEKDRPAMQLYQPGARNRK
RMSSSSKGYDCIHLGHSPERETDHCYEVVTMVMGLDRGFEKSKDEQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatggccgtggacacggagaaaagtgtcgaaatacaattt
aaggacattccaagagagcaggagagcccaggttgccatctcaaacaaaaagaagagaag
aaggaggtcttttcaaaggttgtgatcagaagactgccacctaacctttcaaaagaacag
cttgaagaacaactaagtccgctcccatcgtatgattactttgagttcttctcagcagat
caaagtctgtatccccaccttttttcaagagcatatatcaattttaaaaacactgaggat
atcgtgttgttcagggatcgatttgacggctacgtctttatcgacaacaaaggtcaagaa
tatcctgcagtggtggagtttgccccctttcagaagatttccaagaaaaaactgaaaaag
aaggatgccaaaactggaagcattgaagaagacccagaatacaggcgattcctggagaac
tattcttgtgatgaggagaagtctatggccaaccctgagactctactgggggagatagaa
gccaaaaccaaagagctcatagccaaacggacaacacccctactggagtacataaaaatt
aagaaaattgaaaaacagagaataagagaggagaaaagagaggagcgaagaagaagagag
cttgagaagaaacggctaagggaagaggaaaagagaaagaggagagaagaggagaggcgc
aagcgaaaagaagcagacaagcagaagaaactgtcggataaggatgttaaaattaagctt
ctgaagaagactgatagagatgacaatccagattcagacagaatgaaggacaaaagcgac
actggggaggcagaaaggggcagatgggagaaagctggaggacaaatgaagtccaaggaa
tccaaggaaaaaggccagcatgagagtgagaaggagcagagagatcagcatgggcgcagg
cagagagacaaagattaccgcggaaaagatgaagagaggaaacggcagcaacaccactat
gacttcgagaagttcatgagaaggaaagatgaaaccaagtggggaaagggctactgccaa
gaccgagccaagaaagaagggcaccatcatggtttttcttactgtgctgatggaggagac
aaactgggaaaggaggagagggaggacctgagtaacagaaaggaacgcctccgaaacaag
gtgagcgagaaggaccgtccagccatgcagctctatcagcccggagctcgcaacaggaag
cgcatgagctcatccagcaagggctatgactgcatccatttgggccactcacctgaacgt
gagacggatcattgttatgaggtggttaccatggtaatggggctggacagaggctttgag
aaaagcaaagatgaacagtaa
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