Oryzias latipes (Japanese medaka): 101167580
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Entry
101167580 CDS
T02443
Symbol
trim9
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM9 isoform X1
KO
K10649
tripartite motif-containing protein 9/67
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101167580 (trim9)
04121 Ubiquitin system [BR:
ola04121
]
101167580 (trim9)
Membrane trafficking [BR:
ola04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
101167580 (trim9)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101167580 (trim9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
fn3
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4
PRY
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
101167580
NCBI-ProteinID:
XP_023807413
LinkDB
All DBs
Position
22:1224594..1248756
Genome browser
AA seq
727 aa
AA seq
DB search
MDEMEEELKCPVCGSFYREPIILPCSHNICLACARNILVQTPEAESPQSSRASGSADYDY
LDLDKMSLYSEADSGYGSYGGFVSAPTTPCQKSPNGVRVFPPAVPQPPPQQHLLQPPGSF
PPIPRNSCITCPQCHRSLILDERGLRGFPKNRVLEGVVDRYQQSKAAALKCQLCEKSPRE
ATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRISRRASPRKISTCTEHELENL
SMYCVQCKTPVCYQCLEEGKHGPHEVKALGAMWKLHKGQLSQALNVLSDRATEAKEFLVQ
LRNMVQHIQENGVEFEACLVAQCDALIDALNRRKAQLLSQVNKEHEHKLKVVRDQISHCT
VKLRQTTGLMEYCLEVIKENDPSGFLQISDPLIRRVHMTEGQWGKGTLTPRMTSDFDLTL
DSGPLLQTIHQLDFVQMKVPAAPILQLEECCTQNNSATLSWKQPPLSTIAVEGYILELDD
GNGGPFREVYVGTETICTVDGLHFNSTYRSRVKAFNASGVGQYSKTLIMQTSETGLPPCD
IQSIGAVAWFTFDPSSAHPDILFSNDNLTVTCNSYDDRVVMGNAAFSRGVHYWEITIDRY
DNHPDPAFGIARGDVVKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTDGGIAKGSTVG
MLLDFSRRILIFLINDEQQGPVAFEGLEGAFYPAVSLNRNVQVTLHTGLPIPDFYTPGEV
DPTGSTC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggatgagatggaggaagagctgaagtgtccggtgtgcggctcgttctaccgggagccc
atcatcctgccgtgctcccacaacatctgcctggcgtgcgcgcggaacatcctcgtgcag
acccccgaggcggagtccccgcagagcagccgagcctccggttccgccgactacgactat
ctggacctggacaagatgagtctgtacagcgaggcggacagcggctacggctcgtacggg
ggcttcgtgagcgcgcccaccaccccctgccagaagtcccccaacggggtccgggttttc
cccccggccgtcccccagccccccccgcagcagcacctcctgcagccgccgggctccttc
ccgccgatcccccgcaactcctgcatcacctgcccgcagtgccaccgcagcctcatcctg
gacgagcgggggctgcgcggcttccccaagaaccgggtcctggagggggtggtggaccgg
taccagcagagcaaggcggccgcgctcaagtgccagctgtgcgagaagagcccgcgggag
gccacggtgatgtgcgagcagtgcgacgtcttctactgcgacccctgccgcctgcgctgc
caccccccccgggggccgctggccaagcaccgcctggtcccgccggcgcagggccgcatc
agccgccgcgcgagcccgcgcaagatctccacgtgcacggagcacgagctggagaacctc
agcatgtactgcgtgcagtgcaagacgccggtgtgctaccagtgtctggaggagggcaag
cacggcccccacgaggtcaaagctctgggggccatgtggaagctgcacaagggtcagctg
tctcaggctctgaacgtcctgtccgatcgggccactgaagccaaggagttcctggtgcag
ctgaggaacatggtccagcacatccaggaaaacggcgtggagtttgaggcgtgtctggtg
gcgcagtgcgacgcgctcatcgacgcgctgaaccgccgtaaagctcagctgttgagtcaa
gtcaacaaggagcacgaacacaaactgaaggtggtccgggatcagatctcccactgcacc
gtcaagctccgtcagaccacgggcctcatggagtactgcctggaggtcatcaaggagaac
gaccccagtggattcctgcagatctccgacccgctgatccggagggtccacatgacggag
ggccagtgggggaagggaaccctcacccccaggatgaccagtgacttcgacctgaccctg
gacagcgggccgctcctgcagaccatccaccagctggactttgtgcagatgaaagtccct
gctgcccccatactgcagttggaggaatgctgcactcagaacaacagcgccacgttgtca
tggaaacagccgccgctctccaccatcgccgtggagggatacattctggagctggacgac
ggaaacggcggacccttccgggaagtgtacgtggggacggagaccatctgcacggtggac
gggctccacttcaacagcacctacaggtccagggtgaaggccttcaacgccagcggagtg
ggccagtacagcaagacgctgatcatgcagacctctgagactggactcccaccatgtgac
attcagtctataggcgcagtggcctggttcaccttcgacccctcgtccgctcacccggac
atcctgttctccaacgacaacctgaccgtgacctgcaacagctacgacgaccgggtggtc
atgggaaacgccgccttctcccgcggcgtccactactgggaaatcaccatcgatcgctac
gacaaccacccagaccccgccttcggcatcgcccggggcgacgtggtgaaggacgtgatg
ctggggaaggacgacaaggcctgggccatgtatgtggacaacaaccgctcgtggttcatg
cacaacaactcgcacaccaacaggaccgacggcggcatcgccaaagggtccacggtgggg
atgctgctggacttcagccgcaggatcctcatcttcctcatcaacgatgagcagcagggt
ccggtggccttcgaaggcttggagggcgccttttaccccgctgtcagcctcaatcgaaac
gtccaggtcacgctgcacaccggccttcccatcccggatttttacactcctggggaggtc
gaccccaccggctccacgtgctga
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