Oryzias latipes (Japanese medaka): 101167644
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Entry
101167644 CDS
T02443
Symbol
spast
Name
(RefSeq) spastin
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101167644 (spast)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ola04812
]
101167644 (spast)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
101167644 (spast)
Membrane trafficking [BR:
ola04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
101167644 (spast)
Cytoskeleton proteins [BR:
ola04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
101167644 (spast)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
AAA_lid_3
RuvB_N
AAA_5
TIP49
AAA_22
AAA_14
AAA_16
Mg_chelatase
IstB_IS21
AAA_24
nSTAND3
MIT
NPHP3_N
AAA_2
DUF815
WipA_N
AAA_33
Motif
Other DBs
NCBI-GeneID:
101167644
NCBI-ProteinID:
XP_011483006
UniProt:
H2M9W7
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All DBs
Position
15:27912096..27917840
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AA seq
474 aa
AA seq
DB search
MSAKIQQQARGKDSGELIKNHHKQAFEFISKALRIDEDDTGEKGDAVPWYKKGIAELERG
IAVEITVQGEQYDRAKRLQDKMVANLTMARDRLALLEKTLASKKKSSPPPATGLSQTKPK
SSTSSAGGSTNFKPSSVARPQSRTTDSKDVSRTGRTQNGRPTVKQQPKRDMKNFKNVDSK
LANLIMNEIVDRGSSVCFDDIAGQARAKQALQEIVILPALRPELFTGLRAPARGLLLFGP
PGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSVIFIDEV
DSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDEAILRRFAKR
IYVSLPDEKTRFTLLKNLLGKHGNPLGTNDITYLSKVTAGFSGSDLTSLAKDAALGPIRE
LGPDQVRNMSASEVRNIQKKDFEDSLKRIKPTVSPATLDMYAKWNKEFGDTSSL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaaaatacaacaacaagccaggggtaaagacagcggcgaactgatcaaaaac
caccacaagcaggcgtttgagtttatatcgaaggcactgaggatcgacgaagacgacaca
ggagagaagggagatgctgtgccgtggtacaagaaggggattgctgagctagaaaggggc
attgctgtggagataactgtccaaggagaacagtatgatcgagctaagagactacaggat
aaaatggtagccaatcttaccatggctagagacaggctggctttgttggagaagacgttg
gcttctaaaaagaagagcagtccacctccagccactggtttgtctcaaactaaacccaaa
agcagcacttcatcagcaggaggatccacaaacttcaagccctcttctgtcgctagaccc
caatccagaaccactgactcaaaggatgtttcccgaacaggaagaactcagaacggaaga
cccactgtgaaacagcagccaaagagggacatgaagaacttcaagaacgtggacagcaaa
ctggccaatttgatcatgaatgaaatagtggatcggggctcgtcggtttgtttcgatgac
atcgcaggtcaggctcgggctaaacaagctctccaggaaattgtcatccttcccgccttg
aggccagagctgtttactggcctgagagcgcccgcccggggtctgcttttgtttggccca
ccggggaatgggaaaaccatgctggccaaagcggtcgctgcagagtcgaacgccacattc
ttcaatataagtgccgccagtttaacatcgaaatatgtgggagaaggagagaagcttgta
cgagcgctttttgcagttgccagagaactacagccttctgtcatatttatcgatgaagta
gacagcttgctctgtgagaggagggaaggggagcacgacgcctcccgccgcttaaaaacc
gagttcctgatcgagtttgatggggttcagtccgggggggacgacagggttctggtgatg
ggagcaaccaacaggccgcaggagctggacgaagcaattttaaggcgttttgcaaaaagg
atttatgtgtctttaccagatgaaaagacgagattcacgctgctcaaaaaccttctgggg
aaacacgggaatccgttgggaaccaacgacatcacttacctttcaaaagtgacggcggga
ttttcaggaagcgacctgacatcgttggcgaaggacgcggcgctcggccccatcagagaa
ttgggcccagaccaagtacgaaacatgtctgctagcgaggtgagaaacattcagaagaaa
gactttgaagattctctgaagagaatcaagcccaccgttagccctgccactctggacatg
tacgccaaatggaataaagagttcggcgatacgtcatctttgtga
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