Oryzias latipes (Japanese medaka): 101167715
Help
Entry
101167715 CDS
T02443
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03022
Basal transcription factors
ola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101167715
09124 Replication and repair
03420 Nucleotide excision repair
101167715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101167715
03400 DNA repair and recombination proteins [BR:
ola03400
]
101167715
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101167715
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101167715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
DZR
Motif
Other DBs
NCBI-GeneID:
101167715
NCBI-ProteinID:
XP_023814593
LinkDB
All DBs
Position
9:complement(30316464..30322713)
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEVLKEDESGSLKATVEDILFQSKRRRVVESHGQVRLGMMRH
LYVVVDCSRSMEDQDLKPNRLAATLKLLEGFVDEYFDQNPISQVGVITTKNKRAEKLTDL
AGNPKKHITALKKAVDSACVGEPSLYNALNLAVQTLKHMPGHTSREVLIILSSLTTCDPA
NIYDLIQTLKGLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHAIASVSERDARPSFSMSHLDSGTGPGLTLGGYFCPQCHAKYSE
LPVECKVCGLTLVSAPHLARSFHHLFPMVPFLESSVEELQGSRFCEGCQGELRDKSAYVC
PSCRGVFCVECDLFIHDSLHCCPCCIHSRAAL
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagccggagcggaccaagcgctgggaggggggctacgagcggacatgggag
gtgctgaaggaggatgagtctggatcgctcaaggccaccgtggaggatatcctgttccag
agcaaaaggaggagggtcgtggagagtcatggacaggtccggctcggcatgatgcgtcac
ctctacgtcgtggtcgactgctcccgcagcatggaggaccaggacctgaagcccaaccgc
ctcgcagccaccctgaagctgctggagggatttgtggacgagtactttgaccagaacccc
atcagtcaggtgggggtcatcaccaccaagaacaaacgggcggagaagctgacggatctc
gcaggaaatccaaagaagcacatcactgctctgaagaaggccgtggactcagcgtgcgtc
ggtgagccgtctctctacaacgctctcaacctggcggtgcagacgctcaagcacatgccg
ggacacacgagccgggaggtcctgatcatcctcagcagcctcaccacctgtgacccggca
aacatctacgatctcatccagaccctgaagggtctgaaggtgcgggtgtcggtgatcggg
ctgtcggccgaggtccgggtctgcacggttctgacccgggagacgggcggctcgtaccac
gtcatcctggacgagagccacttcaaggagctgctgatgctgcacgtaaagccgccgcca
gccagctcctcctccgagtgctctctgatccggatggggttccctcagcacgccatcgcc
tccgtgagcgagcgggacgcccggccctccttcagcatgtcccatctggacagcggtacc
ggacccgggctgactctgggggggtacttctgcccgcagtgccacgccaagtactcggag
cttcctgtggagtgtaaagtgtgcggcctcactctggtgtcagcccctcacctggcccgc
tccttccatcacctgtttcccatggtgccgttcttggagagttccgtggaggagctgcag
ggcagcaggttctgtgaaggctgtcaaggagagctgagggataaaagtgcgtatgtctgc
ccctcgtgccgcggcgttttctgcgtggagtgtgacctcttcatccacgactccctgcac
tgctgcccctgctgcatccacagccgggccgctctgtga
DBGET
integrated database retrieval system
