Oryzias latipes (Japanese medaka): 101167764
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Entry
101167764 CDS
T02443
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04010
MAPK signaling pathway
ola04210
Apoptosis
ola04218
Cellular senescence
ola04620
Toll-like receptor signaling pathway
ola04621
NOD-like receptor signaling pathway
ola04622
RIG-I-like receptor signaling pathway
ola04623
Cytosolic DNA-sensing pathway
ola04625
C-type lectin receptor signaling pathway
ola04920
Adipocytokine signaling pathway
ola05132
Salmonella infection
ola05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
101167764 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
101167764 (nfkb1)
04218 Cellular senescence
101167764 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
101167764 (nfkb1)
04621 NOD-like receptor signaling pathway
101167764 (nfkb1)
04622 RIG-I-like receptor signaling pathway
101167764 (nfkb1)
04623 Cytosolic DNA-sensing pathway
101167764 (nfkb1)
04625 C-type lectin receptor signaling pathway
101167764 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
101167764 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
101167764 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
101167764 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
101167764 (nfkb1)
Transcription factors [BR:
ola03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
101167764 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
101167764
NCBI-ProteinID:
XP_004084593
LinkDB
All DBs
Position
10:30826654..30872013
Genome browser
AA seq
923 aa
AA seq
DB search
MAGDDHYLRASNQQIYGNLIMDPSWEFTHFPAMPQSTSLQTVSADGPYLQILEQPKQRGF
RFRYGCEGPSHGGLPGASSEKNRKTYPTVKIFNYQGQARVVVQLVTALTSSPQLHAHSLV
GKQCDKGICIADLQSKEATISFPNLGILHVTKKNVAKTLEERMIEAFRMGYNCSISIHPE
IDAVQGEVRVPRELSDHQRCVISSAAASQAKEMDLSVVRLMFTAFLPDSDGGFTRRLEPV
VSEPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDESGMTW
EALGDFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQNI
DKEEVQRKRQKTLPNFQDFSGHGGGGLYRGGGGGSAASGGPGPTGGGFFQGFPGYGYGGG
GGGGFSSGYSAGLGGGLKHDSQGGASRASGGDGDPDDDPASGANQLASAQLRGPAVNRRA
DEGGVCGEQEAAKERRLVDAVCRQLGALFHYSVTGDSAYLLAPQRLLLAAQDEDGDTGLH
LAVLHGQQEALKSLTQVVSALPGDEVLNMRNHLYQTPLHLAVITQQKEAVETLLLAGADP
TLTDRHGNTVVHLAAQQEGCGMIQFLLQHKELRAHLEQTNTAGMCALHLAVLANQLSSVR
ELLEGGACVEAQECSCGRTALHLATETDNVSLAGCLLLEGNARVDSCTFDGSTPLHIAAG
RGLVKLTALLIAAGADPQRENFEPLFFREEDENDCDEDDEGFIPGTSPLSMAANSQVLDL
LNGKDYKPERLGRTVLAPQGDLASLDSQVKLALCRALESEGCWEMLAHSLGLGILNTAFR
LSPSPTKTLLDSYEVSGGTVQDLLSALRVAGGSRALSVLEEALHQHQESPTANQTRGSPV
LDLKAEVRMDSGVCDSGVELSTA
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacgaccactacctccgtgcttctaaccagcagatttatggaaacttaatc
atggatccgtcctgggagtttactcatttccctgcgatgcctcagtccacgtctctgcaa
acagtttcagcggacggaccgtacctgcagatcctggaacagcctaaacagcgcggcttc
aggttccggtatggctgtgaaggtccgtcccacggtggtctgcccggagcctccagtgaa
aagaacaggaaaacctacccgaccgtcaagatcttcaactatcagggccaggctcgggtg
gtggtccagttggtgacggcgctgacctccagcccacagcttcacgctcacagtctggtg
gggaaacagtgcgataaaggaatttgcatcgccgacctgcagtccaaagaagccaccatc
agttttcctaacctggggatcctccatgtgaccaagaagaacgtggccaagactcttgag
gagagaatgattgaagcgttcaggatgggctacaactgcagcatctccatccatccagag
atcgacgccgtgcagggggaggtccgcgtcccgcgagagctcagcgaccatcagcgctgt
gtgatcagcagtgcagcggccagccaggccaaggagatggacctcagtgtggttcgcctc
atgtttacggcgttcctccccgacagcgacgggggctttacccgacgactggaacctgtg
gtgtccgagccgatctttgacagcaaggctccaaacgcctccaacttgaagatcgtgagg
atggatcggacggctggctgtgtgacggggggggaggaggtctacctgctctgcgacaaa
gtccagaaagacgacatccaggtgaggttctacgaggaggatgagtcgggaatgacctgg
gaggccctaggagacttctcccccacagacgttcaccggcagttcgccatcgtatttaag
actccaaagtaccgggacctaaacctgcagaagccgacgtctgtgtttgtccagctgaag
aggaagtctgacaacgagaccagcgagcccaaaccattcacctaccacccccagaacata
gataaggaggaggtgcagaggaaaagacagaagacgctgccaaacttccaggatttcagc
gggcacggaggaggaggtctgtaccgaggaggaggagggggttccgctgcatcaggaggg
cctggacccacaggaggagggttcttccagggttttccaggctatggttatggaggagga
ggaggaggaggattttccagcggttactcagccggtctgggaggaggcctgaaacacgac
tcgcagggcggggcttcacgcgccagcggcggtgacggtgacccagacgatgaccccgcc
tccggggccaaccagctagcatcagcccagctaagaggcccagcggtgaacaggagggct
gacgagggaggggtctgtggggagcaggaagcagccaaagagcggcggctggtggatgcc
gtctgtaggcagctgggggcgctctttcactactcggtcaccggagattcagcatacctg
ctggctccacagcgcctgctgctggcggcgcaggacgaggatggagacaccggactacat
ctggctgtgctgcacggccagcaagaggcgctgaagagtctgacacaggtggtgtccgcc
ctgcctggagacgaggttctcaacatgaggaaccacctgtaccagactcctttgcacctg
gcggtgataactcagcagaaagaggcggttgaaacgttgctcttggccggcgccgaccca
actctcactgatcgtcatggcaacacagtggtgcacctagcagctcagcaggaaggatgc
gggatgatccagtttttactccaacacaaggagctgagagcgcatctcgagcagaccaac
acggcaggtatgtgcgcactccacctggctgtcttggccaatcagctgtcctcggtcagg
gagctgctggaaggcggtgcttgcgtggaggctcaggagtgcagctgtgggcggaccgcc
ctccacctcgccaccgagaccgacaacgtgtcgcttgctggctgcctgctgctggaggga
aacgccagggtggacagctgcacctttgatggctccacccccctccacattgcagcaggg
cggggcttagtcaagctcacggcgttgttgattgctgcaggcgcagacccacagagggag
aactttgagccgcttttcttcagggaggaagatgagaacgattgtgatgaagatgacgaa
ggcttcatcccaggaacaagtcccctcagcatggccgccaactctcaggttctagatctc
cttaacggtaaagattataaacctgaacgtctcggtagaaccgtcctcgctcctcagggt
gacctcgctagtctggactcgcaggtgaagctggcgctgtgcagagcactggagagtgaa
ggatgctgggagatgctggctcacagcttgggtctggggatcctcaacacagccttcaga
ctgagcccctcccccaccaaaaccttgctggacagctacgaggtgtctggcgggacagtc
caggatctgctgagcgctctcagagtagccggaggaagtcgggcgctgagcgtcctggag
gaggcgctgcatcaacaccaggaatccccgacggccaatcagacgaggggaagtccggtt
ctggatctgaaggcagaagtccggatggacagtggggtctgtgacagcggagtggaactg
tccaccgcctga
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