Oryzias latipes (Japanese medaka): 101167840
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Entry
101167840 CDS
T02443
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04140
Autophagy - animal
ola04148
Efferocytosis
ola05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101167840 (vps18)
04148 Efferocytosis
101167840 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101167840 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101167840 (vps18)
Membrane trafficking [BR:
ola04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101167840 (vps18)
Hops complex
101167840 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-C3HC4_2
zf-RING_Vps41
zf-RING_2
DUF2175
DUF5600
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
101167840
NCBI-ProteinID:
XP_004083972
UniProt:
H2MUW4
LinkDB
All DBs
Position
24:complement(21938109..21946318)
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNVVQSSQQLGRLPNINIGITHSGFVNARLEEEKPIFNKQRIDFTPPEK
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQTELGRKDDSRVHRLFLDPTGSHLLISL
SNSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNDTSTGPILVGTNQGVIFEGEISA
NEGSLFNTNPDQYFRQVHALEEDGRPVPVCCLEIERGLENKYFIIATTRKRLFQFVGRVA
EGSEQHGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVKVWEYTPDVDLSLNKPISIVLTQFHFLLLFYDRVKAICILNGQVVHE
DVFPDKFGPLKRMIKDPVGGLVWIYTERAVFRYHIQREARDVWQMYMNMNKFDLAKEYCR
DRPECLDMVLAKEAEHCFQNKRYLESAKCYAMTQNYFEEIALKFIEAKQEEALKEFLLKK
LSSLKLSERTQITLLVTWLAELYLNRLGQLESDGNSGVFQETREEFRQFLNNSKHKETLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHHCQHDNYSAALDVLAKHCDEKLFYK
FSPVLMQHIPKKVVNAWIQMGKKLDPKKLIPALMNYSQMGSTQQIGETIRYMEFCVYELN
VTEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHTSEIHYDLKYALRLCAEHGFHRACVLIY
RIMELHEEAVDLALQVDVDLAKSCADLPEDDEEMRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNHHIEELKQEMEEATESAKRIRGDI
QEMRNKYGVVDSQEKCAACDFPLLNRSFYLFLCGHMFHYDCLLQEVTPHLSAYKHSCLEE
LQKKLSATTLSSRSRHRTAPKEEGDTVSLGKGGAATTREQIISDIDDIVASECAYCGELM
IRTIDKPFIDSHRFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatcctggatgagtacgaagactctcaaaacgtcgtgcagagctcgcagcaa
ctcggccgcctgccgaacatcaacatcgggatcacgcactcaggctttgtgaatgcaaga
ctcgaggaggagaagccgatcttcaacaaacagaggatcgacttcactcccccggagaag
atcaaccacctggccgtgtgcaacaaccaactgtgcatgagtctggggaaggacaccctg
ctcagaattgacttggccaaaccagaccagcctaaccagacagaattgggaaggaaagat
gacagcagagtgcacaggttgttcttggatccaacaggctcccacctgctgatcagtctg
agcaacagcgagtgcctgtacctcaacagaaacacccagaaggtgcgcagtctgtcccgc
tggaggggccacctcattgaaagcgtaggctggaacaaactgctgggcaacgacaccagc
actggacccattttagtgggcaccaatcaaggtgtcatctttgagggggagatttctgcg
aacgagggcagcctgttcaacaccaatcctgatcagtactttagacaggtccacgcactg
gaagaagacggcagacctgtgccggtctgctgcttggagatagaacgaggtctagagaat
aagtacttcatcatagccaccacacgcaaacgtctgttccagtttgtgggaagggtggca
gaaggttctgagcagcacggcttcagctccatcttcagtcagaaccaggacttgctgccc
agttttcaggagttccctgccaacatgggatacagtgaaatcaccttctacacctccaag
cttcggacctcccccaaagcatttgcatggatgatggggaatggcgttctgtatggtcag
ctggattatgtcagaccagattcccttctgagtgatgtaaaggtttgggagtacactcca
gatgttgacctgagcctaaacaaacccatctccatcgtcctgacacaattccatttcctg
cttcttttttatgaccgggttaaggccatctgcattctgaatggacaggtggtgcatgaa
gacgtgttcccagataaatttggccctctcaaacggatgatcaaagacccggtaggagga
ctggtgtggatctacaccgagcgggcagttttccgctatcacatccagcgggaggccaga
gatgtctggcaaatgtacatgaacatgaacaagtttgacttggccaaggagtactgccgc
gaccggcctgagtgtttggacatggtgctggccaaggaggccgagcactgcttccagaac
aagagatacttggagagtgccaagtgctatgcaatgacacagaactactttgaagagata
gcattgaaattcatcgaagccaaacaggaggaggccttgaaggagttcttactaaagaaa
ctgagcagtttaaaactgagtgagaggacacagatcactctgctagtcacctggctggca
gaactctacctgaaccgcctcgggcagctggagagtgatggcaatagtggtgtcttccag
gaaacccgtgaagaatttcgccagtttttgaacaactccaagcacaaggagactctgttt
aacaaccgcagtaccatctacgacctgctggccagccacggcaacgtggatgatatggtt
tacttctcggtggtcatgcaagactacgagagagtgatatcgcaccactgccagcatgac
aactacagcgctgccctggacgtgctcgccaagcactgtgatgaaaagctgttctacaag
ttctccccagtcctcatgcagcacattccaaagaaagtggtgaacgcgtggatccagatg
ggcaagaagctggacccaaagaagctcatcccggcgctgatgaactacagccagatgggc
agcacacagcagatcggtgaaaccatccgctacatggagttctgcgtgtacgagctgaat
gtgacggaagaggccatccataactatctactctcactctatgcaaagtacaagccggac
tctcttctgtggtacctggaacaggcagggacgcacacttcagagattcactatgacctg
aagtacgccctccgcctgtgtgcagagcacggcttccaccgggcctgtgtgctcatttac
aggatcatggagctgcacgaggaagccgtggatctcgctctacaagtggatgtcgacttg
gccaaatcgtgcgctgaccttcctgaggatgatgaggagatgaggaagaagctgtggttg
aagatagcccggcatgtggtgcaggaggagaaggatgtgaagaaagccatgaactgtctc
tccagctgcaacttgctgaagattgaagacatcctgcctttctttccagactttgtcact
atcgaccacttcaaggaggccatctgcagctccctggaggagtacaaccaccacatcgaa
gagctgaagcaggagatggaggaggccacggagagcgccaaacgaatcagaggagatatt
caggaaatgaggaacaaatatggagtggtggattcccaggaaaagtgtgctgcctgtgac
ttcccgctcctcaacagatccttctacctgttcctgtgtggacacatgttccattatgac
tgcctgttgcaggaggtgacgcctcacctgtctgcatacaaacacagctgtctggaggag
ctgcagaagaagctttctgcaacgacactgtccagcagatctcgccaccgaaccgcgccc
aaagaggaaggagacaccgtcagcctggggaagggcggtgcggccacgacccgcgagcaa
atcatttcagacatcgacgacattgttgcctctgagtgtgcatactgtggagagctgatg
atccgaaccatcgacaagcctttcattgattcccacagatttgaggaggaaaagtccagc
tggctctga
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