Oryzias latipes (Japanese medaka): 101167993
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Entry
101167993 CDS
T02443
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101167993 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101167993 (msh2)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101167993 (msh2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
101167993
NCBI-ProteinID:
XP_004080503
UniProt:
H2M372
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All DBs
Position
19:complement(12453046..12461885)
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AA seq
934 aa
AA seq
DB search
MAVQPKQNFSMDSVAEHGFLSFIFSMPEKPDTTFRIFDRNEYYTVHGKDAIFAAKEVFKT
NGVIKYLGAGSRKLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEYKA
SPGNLTQFEDILFGGATGAEGCAGVVAVRFATAADGQRVVGVGYVDAAQRKMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGDSSTDGNKLREVVQRGGMLVSDRKRADFSSKDITQDL
NRLLRVKKGEAMASSTLSELDKQVAMSCLAAVVRFLDLLSDESNFNSFSLASLDLGQYMR
LDNAAVGALNLFQGSPDDISGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQGDLLHRFPDLHRLAKKFHRHSATLQDCYRVYQAVSQIPGLIAAF
EKYSGSYQVLLQAVFTSPLTDLQTDFTKYQEMVETTLDMNQIDHHEFLVKASFDPVLTEL
REKMDDLEESMQAVLNSAARELGLEAGKTVKLESNAMLGFYLRVTCKEEKGLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTRNKEEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDAVVSLALASVSAPVPYVRPRILDEGCRRLELVQARHPCMETDADTAFIPNDVSFVQGE
RSFYIITGPNMGGKSTYIRQVGVIALMAQIGCFVPCEKAELSVTDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKISCFCLFA
THFHELTALASQQPSVHNLHVTALTTHNTLTMLYRVKAGVCDQSFGIHVAELACFPPAVL
AVAREKAEELEEFQEPMGNQQEEDEPQTKRRRTDKQVGESLIQEFLQKVKSLPVDTMAEE
EVKVELRRLKQELISKNNTYISDILARCVPVKTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacaaaacttctccatggacagcgtggccgagcacggcttcttg
agcttcattttctccatgccggagaagccagacaccacgttccggatatttgaccggaac
gaatactacacggttcacgggaaagacgccatatttgctgccaaggaggttttcaaaact
aatggagtcatcaaatatttaggcgcaggcagtcgaaagctggagagtgtgatcctcagc
aagctgaattttgaggcctttgtgaaagacttgttgctggtgaggcagtacagagtggaa
gtgtacagaaaccacagcaaaagcagcaaagagcacgactggagaattgagtacaaggcc
tcgcctggaaacctgactcagtttgaggatattctctttggaggtgcgacaggagcagag
ggctgtgcgggagttgttgctgttcggtttgcgacagcagctgacgggcagcgcgtggtt
ggagtcggctatgtagacgcagctcagagaaagatgggagtttgtgagtttccagacaac
gagatcttctccaaccttgagtccctgctcgtccagataagccccaaagagtgtctctta
gctcagggtgacagcagcactgatgggaacaaactgcgggaggtggtgcagcgcggtggg
atgctggtgtctgacagaaagagagctgacttcagcagcaaagacatcacccaggatctc
aacaggctgctgagggtgaagaaaggagaagcaatggcgagcagcacactttctgaactg
gacaagcaggtggccatgtcgtgcttggctgcagtggtgcgattcctcgacctgctttca
gacgagtctaacttcaactcctttagcctcgcctcactggacctgggtcagtatatgagg
ctggacaatgctgctgtcggagctcttaacctcttccagggctcacctgatgacatcagc
ggcgctcattcattggccggtttgttgaacaagtgtcggactccacagggacagcggctg
gtcaaccagtggatcaaacagccactcatggacaaaaccaaaatagaggagaggttggat
cttgttgagagttttgtgtgcgactctgagctgaggcaaacctgtcagggggatctgctg
caccgctttcctgaccttcaccgcctggccaagaagtttcaccgccactccgccacactg
caggactgctaccgcgtctaccaggctgtgagccagatccctggcctcatcgcagctttt
gagaagtattcgggaagctaccaggttctcctgcaggcggtcttcacctccccgctcaca
gacctgcagactgacttcaccaagtaccaggagatggttgaaaccactctggacatgaac
cagattgatcaccacgagttcctcgtgaaggcatcgttcgatcccgtgctgactgagctt
agagaaaagatggacgatctggaggagagcatgcaggcggttctgaacagtgccgccaga
gaactgggcctggaggcgggtaagacggtgaagctggaatccaacgccatgctgggtttc
tacctgagagtcacgtgtaaggaggagaaaggtctgcggaacaacaagaagttcaccacc
ctggacgtccagaagaacggagtgcgcttcaccaacagcaaactgagctctctgaatgag
gagtacaccagaaacaaggaggagtatgaggaggcccagaacgccatcgtcaaagagatc
atcaatattgcctcgggttacgtggaccctctccagacgctgagcgacgtgatagcgcag
ctggacgcggtggtgagcttggccttggcgtccgtttcggcgcccgtgccgtacgtccgt
ccccgtatcctggatgaaggctgccggcgcttggagctggtgcaggcccgccacccctgc
atggagacggacgccgacactgccttcatacccaacgacgtctccttcgttcagggagaa
aggagtttctacatcatcacaggacccaacatgggggggaagtcgacgtatatccggcag
gtgggtgtgattgccctgatggctcaaattggctgcttcgtcccatgtgagaaggcggag
ctcagcgtgactgacagcattctggcgcgagtgggagctggcgacagtcaggtgaaagga
gtgtccaccttcatgtcggagatgttggagaccgctgccattttacgctcggccaccgag
aactcgctcatcatcatcgacgaactgggcaggggcacgtcgacgtacgacggttttggg
ctggcctgggccatcagtgagcacatcgcatccaaaattagctgtttctgtctctttgca
actcactttcatgagctgacggcgctggcatcgcagcagcccagcgtgcacaacctgcac
gtcacggccttgacgacccacaacacactcaccatgctgtacagggtcaaagcaggtgtg
tgtgaccagagttttgggattcacgttgcggagttggcctgcttccctccagccgtgctc
gcggtggcgagggaaaaggctgaggagctggaggagttccaggagcccatggggaatcaa
caggaggaggatgagccccagacaaagaggaggaggacggacaaacaagtgggagaaagt
ctgatccaggagtttctacagaaggtgaagtcccttcctgtcgacaccatggcggaggag
gaggttaaggtggagctgaggagactgaagcaggagctcatctccaaaaacaacacctac
atcagtgacatcctggctcgctgtgttcctgtaaaaactgcctga
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