Oryzias latipes (Japanese medaka): 101168021
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Entry
101168021 CDS
T02443
Name
(RefSeq) cyclic nucleotide-gated channel rod photoreceptor subunit alpha-like
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
101168021
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ola04040
]
101168021
Ion channels [BR:
ola04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
101168021
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
Presenilin
Motif
Other DBs
NCBI-GeneID:
101168021
NCBI-ProteinID:
XP_011474530
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All DBs
Position
1:complement(15123280..15127999)
Genome browser
AA seq
727 aa
AA seq
DB search
MSSSTAVHRLSLPPHTEPQSCTDSGEQSEEELNRPESNPPHVTNTNNNNNNEEEEKAQRK
KERKERKEKKEKKKKKKEEKEAKEKDEKEKVEKEKEKEKEKEKEKEKEKEKAKEKEKEKD
KDKPKEIFVINPAGNLYYNWLFFITVPVMYNWTMIVARACFEELQHDYIIYWFFLDYTSD
LIYLADMFFRTRTGYLEQGLMVKDKKLLQDRYTSSFQFRLDALSMLPTDIFYLVLGLDYP
EIRINKLLRIGRMMEFFTKTETKTNYPNIFRIANLIMYILIIIHWNACLYFSFSKSIGFG
ADDWVYPALDDPDEPEFGQPMRKYAFSLYWSTLTLTTIGETPPPALDSEFFFHVMDFLVG
VLIFATIVGNIATMISNMNAAQAQFQSRIDNIKHYMQARKVSKELELRVIKWFDYLWNNG
KAQDEREVLRYLPDKLKAEIAIQVHMDTLKKVRIFADCEAGLLIELVLKLRPQVFSPGDY
ICKKGDIGREMYIIKDGKLAVVADDGVTQFVVLGSGSYFGEISILNIKGSKAGNRRTANI
RSIGYSDLFCLSKDDLMESLLEYPDAKGMLEEKGRQILIKDGLIDLDPANIKPEAKELEE
KVDKLYNAMDLMQTKLKKILQKKKSADKALKERIKDLERLSGEEAEEDEEDEDVKKEATV
EEAVEERADGKVGDDEEEKKEEEKGEVSEKGEEKRGEEEEKPEEMKEEKDEDEEEEEEKK
TDEDEKK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatccacagcagttcaccgcctctctttaccacctcacacagaaccacagtct
tgcaccgacagtggagagcaaagcgaagaagaactaaatagaccagagtcaaatccccct
catgtgaccaacacaaataacaacaacaataatgaagaagaggaaaaggcacaaaggaaa
aaagagaggaaggagaggaaagagaaaaaagaaaagaaaaagaagaagaaggaggaaaaa
gaagccaaagagaaggatgaaaaggaaaaagtagagaaagaaaaggaaaaagagaaggaa
aaggaaaaagagaaggaaaaggaaaaagaaaaagcaaaggaaaaagagaaagaaaaggac
aaggacaagcctaaagaaatatttgtgattaatccagctgggaatctatattacaactgg
ctgtttttcatcacagtgcctgttatgtacaactggaccatgatcgttgccagagcttgc
tttgaagaacttcagcatgactatataatctattggttctttttggattacacttctgac
ttaatatacctagctgacatgttcttcaggaccagaacaggctaccttgaacaaggtttg
atggtgaaagacaagaagctgctccaggatcgctatacatccagcttccagttccgtctt
gatgctctatccatgctgccgacagatattttctatcttgttttaggtcttgattaccca
gagatccgaatcaacaagctgctgagaataggtcgaatgatggaattcttcacgaagaca
gaaaccaaaactaactaccctaacatctttcgcattgcaaacctgatcatgtacatcctc
atcatcattcactggaatgcctgtttgtacttttctttttctaaatccatcggctttggg
gccgatgattgggtctatccagctctggatgatcctgatgaaccggagtttgggcagcca
atgaggaagtatgcgtttagtctctactggtccactctgacgctgaccaccatcggagaa
acccccccaccagctctggattcagaattctttttccatgtgatggacttcctggttggt
gtcctgatctttgctactattgtgggaaacatcgccacaatgatctccaacatgaatgca
gctcaagcccagttccagtctcggattgacaacatcaagcactatatgcaggctcgaaaa
gtcagcaaagagcttgagttgcgagtcatcaagtggtttgattacctgtggaataatgga
aaggcacaagatgaaagagaagtgctgcgatacctcccagacaagttgaaagcagaaata
gccatccaggtccacatggacaccttgaaaaaagttcgtatttttgcagactgcgaggca
ggactcctcatcgaactggtgctaaaactccgaccacaggttttcagcccgggagactac
atctgcaaaaagggggacattggtcgtgagatgtacatcatcaaagacggaaagctagca
gtggttgccgatgatggggtcacacagtttgttgtgctaggtagtggcagctattttggt
gagatcagtattcttaatattaaaggcagcaaagcaggaaacaggcggacagcgaacatc
cgcagcattggatactctgatctcttctgcctctccaaagatgacctaatggagtccctg
ttagagtatccagacgccaaaggtatgctggaggagaagggaaggcagatcctgataaaa
gacggcctgatagacctggatcccgcaaacatcaaacctgaggcgaaagagctggaagaa
aaggtggacaagttgtataacgcaatggacttgatgcaaactaagctcaagaagattcta
caaaagaaaaaaagcgctgacaaagcactcaaagagcgaatcaaagatctggagcgcctg
agtggagaagaagcagaagaagatgaggaggatgaagatgtgaaaaaggaagcaacagtg
gaagaagctgtggaggagagagcagatggaaaggtgggagatgatgaggaggagaaaaaa
gaagaagaaaaaggtgaagtgtcggagaaaggtgaagaaaaaagaggggaagaggaagaa
aaaccagaggaaatgaaggaggaaaaagatgaagatgaagaggaagaagaagaaaagaaa
acagatgaggatgagaaaaaatga
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