Oryzias latipes (Japanese medaka): 101168123
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Entry
101168123 CDS
T02443
Symbol
slf1
Name
(RefSeq) SMC5-SMC6 complex localization factor protein 1
KO
K26126
SMC5-SMC6 complex localization factor protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101168123 (slf1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
101168123 (slf1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
RTT107_BRCT_5
BRCT_2
BRCT
MukF_C
Motif
Other DBs
NCBI-GeneID:
101168123
NCBI-ProteinID:
XP_023814308
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Position
9:15911530..15946264
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AA seq
873 aa
AA seq
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MERCKIFQISGIKNRDKKRVLVKGIQQLGGKYIGGSVYKNGITHLITPQVSPSEKFLAAC
AAGKWVVTLDYVVDSVKNGSWLPERSYEVAISTASSAAFYPVRQWREKVATGRMTGAFQG
WRVLLMVQEPRKRAMFKRLLMAGKAEVYKYPPPSYISITHVMAKPVTDNSKSHNAPCYPV
SYIVQHLFQGSHLDVNFNIMKSSYFDFDLSNLEMELKSFVIKKEGRPRFCFLEFLGYHDP
YRTHSQATATDFSNVGSMIECGLFAEALDSIKSAVYPGLPPPATYLISFLQYAQQGNATQ
AFLRSLHQFLSVLLITNPPWLALSTGKKYYIQVLQCPQCKNGLWPFLETAIRYCLFDSAT
CHPLPGPGLPTLIHFNRDILALCLKIFQGELHCITSRGFLQGTRASPSLSSSSSSSLLYR
TFWTVWERSTLLSHAVKQLAQLLIQAAMVDYAERDENLHLADILLDLLSVLVEFWYQQHF
KLNQILVDKGFKDLSEHLVIITQDVSPSVLIELVARVHSSRFRLVMADAMFRNLCCRSGC
TLGDEPLSLKKMVLSYLPALGSLAQTPCSAPPRTGPTSYSCAGGGNSCRNQDSLGKETST
EKENIPKGLHRVNAAGETLLHRACKRNQVEKLLQILALPGTDVNVRDHAGWTPLHEACNH
GSTECVKVLLQHRPAPFLSNQVGGVSPLHDALLNGHMDIAKMLLEHGGSALFLQTDEEGR
VPLDLVSAAAQREELLHSAQVGDSALRNIVAEVLNIPLLEAGACLLGHLIYSYLVERGPP
SHTSSSNQLHNLGYKLVRALQRNSLREVTLGWTDQRAVRLMEDVETLLELSKGQNQDLVP
PAVKQCKAENTQFLMQILEDLRSRGETLLAYMW
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggtgcaagattttccagatctctggcataaaaaaccgtgacaagaagagagtt
ttggtgaaagggattcaacagctgggaggaaaatacattggtggctctgtatacaagaat
ggcatcactcatctcataacaccccaggtttcccccagtgagaaatttctggctgcatgt
gctgcaggaaagtgggttgtgacactggactatgttgtggatagtgttaagaatggctcc
tggctgccggagcgatcctacgaagtggccatttccacggcctcctcagctgccttctac
cccgtcaggcagtggagggaaaaggtggccactggcagaatgacgggggctttccaaggc
tggagagtactccttatggttcaagagccccgcaaaagagccatgttcaaacggctgttg
atggcaggcaaggcagaggtgtacaaataccctcccccctcctacatctccatcactcat
gtcatggcaaaacctgtcacggataactcaaaatcccacaatgccccttgctacccagtc
agttatatagtccaacacctttttcagggcagtcatttggatgtaaatttcaacataatg
aaaagcagttacttcgatttcgacctctctaatttggagatggagctcaagagctttgtg
atcaagaaggagggccggccaagattctgcttccttgaatttctgggttaccatgaccct
tatcgtacccattcccaggccacagcaacagacttcagcaatgttggcagcatgatagag
tgcggcctcttcgctgaggccttggactcaatcaaaagtgcagtgtatccagggcttccg
ccaccagcaacgtatctgatctccttcctccaatatgcccagcagggcaatgccacacaa
gccttcctgagatctttacatcagtttttgagtgtcctgctcattaccaacccgccatgg
ctggctcttagtacagggaaaaaatattacattcaagtgctgcagtgtccacagtgtaag
aatggcttgtggccttttttagagacagccatcaggtattgcctgttcgacagtgccact
tgtcaccccctccctggacctgggctgccaactctaatacatttcaaccgtgacattctg
gcactttgtctgaagattttccaaggggaactccactgtattacaagcagaggtttccta
cagggaacacgagcgtccccttctttatcatcgtcgtcatcaagctccttgttgtacaga
accttctggactgtgtgggagcgctcgacgttactgtcccatgctgtgaaacaacttgct
cagctcttaatccaggctgcaatggtggactatgctgagagagacgagaacctgcatttg
gcagacatcctgttggacctgctctctgtgttggtagagttctggtaccagcaacacttc
aaactgaaccagattctggtggacaaaggtttcaaagacctgtcggaacaccttgtcatt
attacccaggatgtgtctccatctgttttaattgagttggtggccagagttcactcatcc
aggtttcgtctggtgatggccgatgccatgttccggaatctctgctgcagaagcggctgc
actctgggagacgaacctctttctcttaagaagatggtgctttcctacctgcctgctctg
ggaagtttagctcagactccctgcagtgcacccccgaggactggacccacttcatacagc
tgtgcgggtgggggaaacagctgcaggaaccaggactccttggggaaagaaacaagcaca
gagaaagagaacatccccaaaggcttgcacagagtcaacgcagcaggagagaccctcctc
cacagagcctgcaagaggaaccaagtggaaaaactgcttcagattctggcgcttcctggc
acggacgtcaacgttagagaccatgcaggctggacgcctctacatgaagcgtgcaaccat
ggcagcactgaatgtgtgaaagttttgctgcagcatcgacctgcacctttcctcagcaac
caggtgggtggagtgagtcccctgcatgatgccctcctgaatggacacatggacatcgcc
aaaatgttactggagcatggaggttcagctctctttctgcagacggatgaagaaggacga
gtcccgctggacctggtgtctgctgcagctcagagggaggagctcctccacagcgcacag
gtcggagactctgccctcagaaacatagtcgctgaggttttgaatattccccttcttgag
gccggggcctgtctgttaggtcacctcatttactcttacctggtggagaggggtccaccc
agccacacttcatccagcaaccagctccacaacctgggctacaaactggtcagagctctg
cagagaaactccctccgagaagtcactctgggctggacggatcagcgggctgtgcggctg
atggaggatgtggagacactcctggagctgagcaaagggcagaaccaggatctggtgcct
cctgctgtgaagcagtgcaaagctgagaacactcagttcctgatgcagatactggaggac
ctcaggtctcgcggtgaaacactactagcttatatgtggtga
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