Oryzias latipes (Japanese medaka): 101168303
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Entry
101168303 CDS
T02443
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101168303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101168303
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101168303
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101168303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101168303
NCBI-ProteinID:
XP_004073933
UniProt:
A0A3B3HA99
LinkDB
All DBs
Position
11:14718517..14753450
Genome browser
AA seq
909 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDMFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSVQVDAIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLDDITQSLVA
TSPPGHSHLEDEIFQNSSSTPTSTTSSSPIPPSPAAFTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSSASGPTSSSLVSVAGGVGGGGGSSGHHSSSGGLLSNS
SSGSYSNATQQPPHPSTQQQAKNSAPTSNSSTSSNSHCAPSASSPPSTCTLGSLASNSQT
PPGPTLTSNTLGLSLGLSLGKGSSVTSGSAAGGLGLTGMPASLGSIGGLLSSSTPAPYAQ
AAASGTGSSLPGSLGGVSASLTQSGVGAVGSGSIAVGGPTSSSGGLLGTSPGPGSIGSGI
LGLGSAQSGTQGSSLMSPNSMGGLVPGSGVGVIGSNSGSGSTGSVGGSSPLAVRPPSQQK
QNGSTSYSAVVADSTTDSALNSASQSQSSQPSSLTSTTTQPKDTGPSLLGSMSLSSTSPS
PASYEAKSSSSSSSSLLNGPLSYSQSSDSIKPQESLSSLKSMAERAAHSSGIEGDMASLH
LTPDIFSSSTTAPPGAPSAPQSSLSEVSIPPSLGVCPLGPAPLSKDQLYQQPMQEAAWTH
MPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTLEFYQRLSTETLFFIFYYLEGTKAQ
YLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEY
RYLEDRDLQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctaaaaaaagtagctgaa
ggagtggagcagtttgaagacatctggcagaagcttcacaatgctgctaatgccaaccag
aaagaaaaatatgaagctgacctcaaaaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctagtagagaac
cgcaaactcatcgagacgcaaatggagcggttcaaaatcgtagaacgagaaacgaagacg
aaggcgtactcgaaagaagggctcggcctcgcccagaaggttgatccagcccagaaggag
aaggaggaggtcggcacgtggctgacgaacacgatagacacgctgaacatgcaagtggac
atgtttgaaagcgaagtggagtcgctgtcggtccagacaaggaaaaagaaaggagacaag
gagaagcaggaccggatcgaagagctgaagaagttcatcgagaagcatcggtaccacatc
cgtatgctggagacgatactgaggatgctggacaacgactcggtccaggtggatgccatc
cggaagatcaaggatgatgttgagtactacatagactcatcgcaggatccagactttgag
gagaatgagttcctgtatgacgacctggatctggatgacattactcagtctttggtcgcc
acatccccaccgggccactcgcacttagaagacgagatcttccagaactccagcagcacc
cccacctccaccacctcgtcctcacccattcctccgtcacccgccgctttcactacagaa
aactcagaagacgacaagaagagaggacggtcaacagacagtgaagttagtcagtcgcct
gtaaagaacggaaacccctcctcttcgttatcttcctcctcctcctcgtcctcttcgtcc
tcctcttcttcggcctcggggccgacttcatcctcattggtgtccgtcgctggaggagta
ggaggaggaggtgggagcagcggtcaccacagcagctcagggggtctcctctccaactct
tcgtcaggcagctacagcaacgccacccagcagcccccccacccgtcaacacagcagcag
gccaaaaactccgctcccacctccaactccagcacctccagcaacagccactgtgccccg
tcagcctcctccccccccagcacgtgcacactggggtccctcgcgtcaaactcccagact
ccacctgggcccacgctgacctccaacaccctgggcctcagtctggggctctcgttgggg
aaaggcagctcggtcacctctggttcggcggctgggggcctcggcctgacagggatgccg
gcatcccttggcagcattgggggtctcctgtccagctccacccctgccccgtacgctcag
gcggcagcctcaggcaccggcagctctttaccgggatctctggggggtgtcagcgcctcc
ttaacccaaagcggggtcggtgcagttggcagtgggagcattgcagtcggcgggccgaca
tcctcctcgggggggctactaggcacatcgccaggaccgggcagcatcggctccgggatt
ctgggtttgggttctgctcagtcgggaacgcagggctcttctttgatgtcaccaaactcc
atgggtggtctagttcctggaagtggcgtgggagtcatcgggagcaacagcggctcggga
tcgacaggaagcgtggggggaagttcgccgcttgctgtccgaccaccaagccagcagaag
cagaacggtagcaccagttacagtgctgtggtggcagacagcacaacagactccgccctc
aacagtgccagccaatcacaaagcagccagccctcatctctgacctccacgacgacgcag
ccgaaagacactgggcccagtttactgggctcgatgagtttgtcgtccacctctccgtcg
ccggcgtcttacgaggcaaaatcatcgagcagcagcagcagcagcctgctgaacggaccg
ctgtcgtactcgcagtcgtctgacagcatcaagccccaggagtctctgagcagcctgaag
tccatggctgagcgagcggcccacagttcagggatcgagggagacatggcctccctgcac
cttactccagacatcttctccagcagcactacagcgccccccggcgccccgtcagcacct
cagtcctccctgtcagaggtcagcatccccccatccttgggggtgtgcccactgggacca
gcccccctgtccaaagaccagctctaccaacagcccatgcaggaggcggcgtggacgcac
atgccccacccatccgactccgaaagaatcaggcagtacctgatgaggaacccctgcccc
actctgcctttccaccaccaggttccacccccacactctgacactctagagttttaccag
aggctctcgacagaaacactcttcttcatcttttactacctggagggcaccaaggcccag
tatctggcagccaaagctctgaagaagcagtcatggaggttccacaccaagtacatgatg
tggtttcagcggcacgaggagcccaagaccatcaccgacgagtttgaacagggaacctac
atttatttcgactatgagaagtggggccagcggaagaaggagggattcacgttcgagtac
aggtacctggaagaccgagacctccagtga
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