Oryzias latipes (Japanese medaka): 101169533
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Entry
101169533 CDS
T02443
Symbol
ogg1
Name
(RefSeq) N-glycosylase/DNA lyase
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101169533 (ogg1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101169533 (ogg1)
Enzymes [BR:
ola01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
101169533 (ogg1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
101169533 (ogg1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
RecR_HhH
Motif
Other DBs
NCBI-GeneID:
101169533
NCBI-ProteinID:
XP_004070580
UniProt:
H2M4W6
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All DBs
Position
7:16944299..16947640
Genome browser
AA seq
395 aa
AA seq
DB search
MASSHVVLTSGAKLWRSLPCLTSELRLDLTLACGQSFRWKETAEGHWTGVMGGRVWTLTQ
TDDRLWYHVYTNQKKRGGRENRAEEKPEGVPNVEEEAPAVTDEQQSTMEAEMLRDYFQLH
VKMEDLCRHWGAADRHFKNTADVFTGVRMLRQDPTECLFSFICTSNNHISRIQGMVERLC
QALGAPLCQLDQTPYHDFPTLSALADSSVEARLRDLGFGYRARYLQQSAKMILDSHGSQW
IEGLRRVPYLEAREALRTLPGVGAKVADCVCLMSLDKPEAVPVDTHVWQIAKRDYKYAAD
NGQKSLTDKLYKDIGDFFRKLWGPYAGWGQSVLFCADLKKFQTLKEMGHMKQPKKEKETQ
KRCKKTKKDFDGNKIKTEPEYRKKAKISVKKESTL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggctagtagtcacgtggttttaacatcgggggccaaactatggagatctttgccttgc
ctcacttcagagctacgtctggatctcactcttgcctgtggacaatctttccgctggaag
gaaaccgcagagggacactggactggagtgatgggagggcgggtgtggactctgactcaa
accgatgaccgactgtggtatcatgtctacacaaaccaaaagaaacggggaggaagggaa
aacagagctgaggagaaacctgaaggtgttccgaatgtggaagaggaggcaccagctgtc
acggatgagcagcaaagcaccatggaagcagagatgctgagagactacttccagctgcat
gtgaagatggaggatttatgcaggcactggggagcagcagaccgtcacttcaaaaacact
gcagatgttttcactggtgtcaggatgctgcgccaggatcccacagagtgtctgttctcc
ttcatctgcacctccaacaaccacatctctcgtattcagggcatggtggagagactgtgc
caggctttgggggctccactctgccagcttgatcaaactccttaccacgattttccaaca
ttgtcagctcttgcagacagcagtgtagaggctcgtcttagggatcttggttttggatac
agggcacgatacctccagcagagtgctaaaatgatcttagacagccacgggtcccaatgg
atcgaaggtttacgcagagttccctatctggaggctcgtgaggctctccggacactccct
ggggttggagcaaaggtggcagattgtgtgtgtttgatgtccctggataagccagaagct
gtgcccgttgacacacatgtctggcagattgccaagcgggactataagtatgctgctgat
aatggacaaaagagcttgacagataaactttacaaagacatcggagatttctttagaaag
ctgtgggggccgtatgctggttggggccagtcggtgctgttctgtgcagatctcaagaag
ttccaaaccctcaaagaaatgggacacatgaagcagccaaagaaggaaaaagaaacacag
aaaaggtgtaaaaaaacaaagaaggattttgatggaaataaaatcaaaacggagccagaa
tataggaaaaaggcaaaaatttctgtaaaaaaagaaagtactctatag
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