Oryzias latipes (Japanese medaka): 101169758
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Entry
101169758 CDS
T02443
Symbol
afdn
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04517
IgSF CAM signaling
ola04520
Adherens junction
ola04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101169758 (afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
101169758 (afdn)
04530 Tight junction
101169758 (afdn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
101169758
NCBI-ProteinID:
XP_023808727
LinkDB
All DBs
Position
24:complement(753042..804543)
Genome browser
AA seq
1765 aa
AA seq
DB search
MDPQDLEFHGVMRFYFQDRVAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKY
SLYEVHVSGEERQLDLDEKPLVVQLNWNKDDREGRFVLKNENDVPPKKSQSNGPEREKDG
VIQNFKRTLSKKEKKKEKKREKEFIRMPDEDERTLGREDGENSRLAAEVYKDMPETSFTR
TISNPEVVMKRRRQQKVEKRMQDFINNDGRPDSGGTLRIYADSLKPNIPYKTLLCSVRDT
ADLVVVEALEKYGLEKENPREFCIARQEEKTGKEVILDDSECPLQILRDWPADRGVLVFQ
LKKKPPDYQGRKGRKMEDKGLRGKEGLLPPEKLPYLVELSPGRGNHYAYYAYRHPEDGSD
SRDKPKMYRLQQSITEVGSDCTDDGAIQLLGPGVLPHHCNLMHSEGMVTVTPHGPDAETF
IDRQRVTETTVLHSGSTLQFGSAHVFKFVDPLFDQGGKRDPPSAMRGRHKSGSVPENDLH
RDVHSGAALPTSKSSGKLEMERGMVKPMIRGEQLDSRSQDALAERTELCLPASIEFRENS
EDTFLSAIINYTNSSTVHFKLSPTYVLYMACRFVLSPAYRPDISPSERTHKVIAIVNKMV
SMMEGVIQDMREGDQKQKNIAGALAFWMANASELLNFIKQDRDLSRITLDAQDILAHLVQ
MAFKYLVHCLQADLNNYMPAFLDDPEEHNPQSPKIEDVLHTLSGAMSLLRRCRVNAALTI
QLFSQLFHFINMWLFNKLVTDADSGLCCHYWGAILRQQLSHIEAWAEKQGLELAADCHLS
RIVQATTLLTMNKYSKEDVQNIHSTCFKLNSLQLHALLTNYHCAQGEPYIPPELINEVVA
VAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNLPNGLQDFLEPLLQRDF
CRLLPHPRSPGTWTVHFEGADCDNHFSAAETSDMPMRKEPEVVTVTLKKHNGMGLSIVAA
KGAGQEKLGIYIKSVVKGGAADNDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGAVV
TLEVAKQGAIYHGLATLLNQPSPMMQRAADRGRDKNGKMRPKSEGFELYSNSVQNGSPES
PQPGWDPYPEPKKTGEDRLLKNRLDHRSSPNVANQGQSPASKSMYPGGPGTKITSVSTGN
LCADDEPSPPHPEAYPIPTQTYPREYFTVPASKSQDRVVGMGQGPPQHWQGMEDRERLPL
MDSLHNSMQRVDHSQEDLYPPPGGLRPDERLLPHYPQDYQPPHRDLDYQRAPPGGHGGLD
HWPPQPQVSSSLESSTSSQEHLNFSASSSKSTTQKTGPGRWKTPNAPHAGPPHMGQAPSR
SDLPPPPPPPPAPYDHYDPQAELPLPPPPAIAPVTAQQAADRRKREEQQRWYEKEKARLE
EERERKRREQERKLGQIRPNPVMPVQPQNNGGPMLPPHHQPPMASVAPPQPYQLQPPPTR
PEKLSSLPRSAVPPPASASTGVDTVIRELLPQQQPRTIERRDLQYITISKEDVLTSDSLS
PDPWKRDAREKAEKQQQLHIVDLLDKEIQELQAKPERTAEESDRLRKLMLEWQFQKRLQE
SKQSEEDEEEEDDEDVDTMLIMQRLEAEKRARQQTAVPAISVLDLLQDEERRRKQQLEEI
RKREAEEQAKQQLEEERRWREEERVRREAEEKRRQEEEYYARLEAERRRQHEEAERKLLT
PDEPAGFGSHTGNPAGVVGTGEVYKDPRDRWAKSQEQENSVPGGAPESLTFKERQRLFSQ
GKEVSNKVKASRKLMELENELNTKQ
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcaggacctggagttccacggcgtcatgcggttctacttccaggaccgggtt
gccggtaactttgccacaaagtgcatcagagtgtccagcacggcgacaacgcaggacgtc
atcgagacgctagccgagaagttcaggccggacatgaggatgctctcctctcccaaatac
tcgctgtacgaggtccacgtcagcggcgaagagcgtcagctggacctggacgagaagccg
ctcgtggtgcagctgaactggaacaaagacgacagggaggggcgcttcgtcctgaagaac
gagaacgacgtcccgccgaagaagagccagagtaacgggccagagagggagaaggacgga
gtgatccagaacttcaagagaacactgtccaagaaggaaaagaagaaggagaaaaagagg
gagaaggagtttattcgaatgcctgatgaagacgagaggacgctcggccgtgaagacggg
gaaaacagtcgactggcggcggaggtttataaagacatgccggagaccagcttcaccaga
accatctccaacccggaggtggtgatgaagaggaggcgtcagcagaaggtggagaaacgc
atgcaggacttcatcaacaacgatggaagaccagattcaggaggaaccctgaggatctac
gcagacagcctgaagcccaacatcccctacaagaccctcctgtgctccgtgagagacacg
gccgacctggtggtggtggaggcgctggagaagtacggcctggagaaggagaaccccaga
gagttctgcattgctcggcaagaggagaagaccgggaaggaggtgattctggacgacagc
gagtgtcccctgcagatcctcagagactggcctgctgaccgaggagtgttagtgttccag
ctgaagaagaaacctcccgactaccagggcaggaagggcaggaagatggaagacaagggt
ctccgaggaaaggagggtctgctgccgccggaaaaactgccctatttggtggaactgagt
ccaggccgggggaatcactatgcctactacgcctatcggcacccagaagatgggtcggac
tctcgggacaaaccaaagatgtaccgcctccagcagagcatcacagaggtgggctccgac
tgcacggacgatggcgccatccagctcctgggtccaggagtcctcccccatcactgcaac
ctgatgcacagtgaaggcatggtgacggtcacgccgcacggccccgatgcagaaaccttc
atagaccggcagcgcgtcactgagaccaccgtgctgcattcaggctccaccctccagttc
ggttcggctcacgtcttcaagtttgtggacccgctgtttgaccagggggggaagagggat
ccgcccagcgccatgaggggcagacacaagtctggcagcgtgccagaaaacgaccttcac
agagacgtccacagcggagccgcgctgccaaccagcaagagttcaggaaagctggagatg
gagagaggcatggtgaagcccatgatccgaggagagcagctggacagcaggtcccaggac
gcgttggcagaacgaacagagctgtgtcttcccgccagcatcgagttcagagaaaactct
gaagacaccttcctgtctgccatcatcaactacaccaacagctccaccgttcacttcaag
ctctcccccacctacgtgctgtacatggcgtgccgcttcgtcctgtcgccggcgtaccgg
cccgacatctcgccgtcagagaggacgcacaaagtcatcgccatcgtcaacaagatggtg
agcatgatggaaggagtcatccaggacatgcgtgaaggggatcagaagcagaagaacatc
gccggagcgctggcgttctggatggccaacgcctccgagctgctgaacttcatcaaacag
gaccgagacctgagtcggatcactctggacgcccaggacatcctggcccacctcgtccag
atggccttcaagtacctggtccactgtctgcaggcggacctgaacaactacatgccagct
ttcctggacgaccctgaggagcacaaccctcagagtcccaagatagaggacgtcctgcac
acgctgtcgggcgccatgtccctactgcggcgctgccgggtcaatgccgcactgaccatc
cagctgttctctcagctgttccacttcatcaacatgtggctgttcaacaagctggtgacg
gatgcagactcagggctgtgctgtcactactggggggccatcctgaggcagcagctcagc
cacatcgaggcgtgggccgagaagcagggcctggagctcgccgctgactgccacctgagt
cgcatcgtgcaggccaccaccctgctgaccatgaacaagtactccaaggaggacgtgcag
aacatccacagcacctgcttcaagctgaactctctgcagcttcacgccttactgaccaac
taccactgtgcccagggggagccctacatccctccggaactgatcaacgaggtggtggcg
gtggcagagaacaccgccgatgagctggcgaggagtgacggcagagaggtgcagctggaa
gaggatccggacctgcagctgcccttcctcctccctgaagacggttactcctgcgacgtg
gtgcgtaacctccccaacggcctgcaggacttcctggagccgctgctgcagagagatttc
tgccggctgcttcctcatccgcgctctcccggtacttggaccgtccactttgaaggagcc
gactgtgacaaccacttctctgctgctgaaacctccgacatgccaatgaggaaagaaccg
gaggttgtcacggtaacgctgaagaagcacaacggcatgggcctgagcatcgtggccgcc
aagggcgccgggcaggagaagctagggatctacatcaagtctgtggttaaaggtggagct
gcggataacgacggccgtctggcggcaggcgaccagctgctgagcgtggacggccgcagc
ctggtgggactgtcgcaggagagagcggcagagctgatgacgaggacgggcgccgtcgtg
actctggaagttgccaagcagggcgccatttaccacggtctggcgacgctcctcaaccag
ccgagccccatgatgcagagagccgcagaccgaggccgcgacaagaacggcaagatgcgg
ccgaagagcgaaggcttcgaactctacagcaactccgtgcagaacgggtctccggagagc
ccgcagcccggatgggacccctaccccgaacccaagaagacgggggaggacagactcctg
aagaaccgcctggaccaccgctccagccccaacgtggccaaccagggccagagtcctgcc
agcaagtccatgtaccccggaggccccggcaccaagatcacctccgtctccacggggaac
ctgtgtgcagacgacgagccctcccctcctcacccagaggcctaccccatccccacccag
acctaccccagggagtacttcactgtcccggcctccaagagccaggaccgcgtggtcggc
atgggtcagggccccccccagcactggcagggcatggaggacagagagcgcctccccctg
atggacagcctccacaacagcatgcagagggtcgaccactcgcaggaggacctgtacccg
cccccggggggcctccgacctgacgagcgcctactgccacactacccacaggattaccag
ccccctcaccgagacctggactaccagagggcccccccaggaggtcacggagggctggac
cactggcccccccagcctcaggtgtcctcctcgttggagtcgtccacctccagccaggag
cacctgaacttctccgcctcgtcctccaaaagcaccacccagaagaccgggccgggccgc
tggaagacccccaacgcgccccacgccggccccccacacatgggccaggcgccgtcccgc
tccgacctgcccccgcctcccccgccgcctcccgctccctacgatcactacgaccctcag
gctgagctgccactgccgccgccccccgccatcgccccggtaacggcccagcaggcggcc
gaccgcaggaagagggaggagcagcagaggtggtacgagaaggagaaggcgcgtctggag
gaggagagggagaggaagaggcgggagcaggagaggaagctgggccagatccggcccaat
cccgtgatgcccgtccaaccccaaaacaacggtgggcccatgctcccccctcaccaccag
ccccccatggcctctgtggccccgccccagccgtaccagctccagcctccaccaaccaga
ccagagaaactgtccagcctgccgcggtcggcggtgcccccgcccgccagcgcttccaca
ggtgtggacacggtgatccgggagctgctcccccagcagcagcccagaaccatcgagagg
cgggacctgcagtacatcaccatcagtaaggaggacgtcctgaccagcgacagcctgtct
ccggacccgtggaagagagacgcccgcgagaaggccgagaagcagcagcagctccacatc
gtggacctgctggacaaggagatccaggagctccaggccaagccggagaggacggcggag
gagagcgaccggctccggaagctgatgctggagtggcagttccagaaacggctgcaggag
tccaagcagagcgaggaggacgaggaggaggaggacgacgaagacgtggacaccatgctg
atcatgcagaggctggaggccgagaagagagccaggcagcagactgctgtcccagctatc
tctgttctagacttgctgcaggacgaggagcggcgccgcaagcagcagctggaggagatc
cggaagcgggaggcggaggagcaggccaagcagcagctggaggaggaaaggaggtggagg
gaagaggagcgcgtcaggcgggaggcggaggagaagaggagacaggaggaggagtactac
gcccgcctggaggcggagcggcggcggcagcacgaggaggcggagagaaagctgctgacc
cccgacgagccggccggatttggttcacacactggaaacccggcaggcgttgtaggaacc
ggagaagtctacaaggatccgagggaccgatgggccaagagtcaggagcaggagaactcc
gtccccggcggcgcccccgagagcctcaccttcaaggagcgccagcgtctcttctcccag
gggaaggaggtgtccaacaaggtcaaggcgtctcgcaaactcatggagctggagaacgag
ctcaacaccaagcagtag
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integrated database retrieval system
