Oryzias latipes (Japanese medaka): 101169920
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Entry
101169920 CDS
T02443
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X3
KO
K14315
nucleoporin NDC1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101169920 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101169920 (ndc1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101169920 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
101169920
NCBI-ProteinID:
XP_004086746
UniProt:
H2N2B9
LinkDB
All DBs
Position
17:30991920..30997714
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AA seq
668 aa
AA seq
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MFAADSGCWFTQKVLCWRAAASVAWSVLLLPASTAAFVVLSKLSVLHPVQMFADCVSVLL
SAGSVFSFVLLAGVIIMVGFLTFEYYTVIPSIACSKVALLGQLLHPRQLLYCLAHGVMGV
VVGWSCAVTIGYRYERLAYLCPQKDRDGLLHMCLNEHHLLLLLEGGFVGLSHSLLGVIQN
LNYVSFGTVQQHKYLCFKASLPLAAKCSAAQAFYSVRNFVLLYFFLGHIPRAWMCKSLSL
HLDSSAHPLDSISGLLDLSLLYLLWISATYLLFSWYMTLLLFRIFVTEAYSFPVQSTFTE
EAPQCLPKVLSEKQPMILKFLALQDLSLLSQHSPSRRSQVFSLSQPGGHPHNWNAISKEC
LSLLADLTQRLVSYHETVATNGRTKSLSSGSDRKTSSESSGTEDLASCRPTFLMKTPASV
FLRSVGAGPQSPLTSPFTPDLDSPFASPTLRQLTSPVDPGSPWHGVVQSPHVMRRAPKLW
STSTDSQRNGSPPASPATLPTPKPESSKPSFLAQFFQNRREQVKHFMAKRMLVMYLFTKL
PEASSQALFADGQAHIWALDGLSYLVQASFTEDQFGVVQTTLPSILSSMLLLQEAVDRHF
KLPHASSKPVRSTISLGDSSHKTLRFALRATLKTAIYRITTTFGAHLHAVQLSAEHRKRL
QHFLEYKE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcggcagattcgggttgttggttcacccagaaggtgctgtgctggagggctgcg
gccagcgtcgcctggtctgtcctcctgctgccggcatccacggcggccttcgtggtcctc
agcaagctcagcgttctccacccggtccagatgttcgcagattgcgtgtccgtgctcctg
agcgccggctccgtcttctctttcgttttgctggctggggtcatcatcatggtcggcttc
ctgacctttgaatattacacagtcatcccatcaattgcttgctccaaagtggcgttgctg
ggtcagctgctccatcctcgccaactgctgtactgcttggcccacggcgtgatgggcgtg
gtcgtagggtggagttgtgccgtcacaatcggttaccgatacgagaggctggcctacctg
tgccctcagaaggacagggacggcctcctccacatgtgcctcaatgagcaccacctgctg
ctcctgctggaggggggctttgtgggactctcccacagcctgctgggagtcatccagaac
ctcaactacgtttcctttgggactgtccagcaacacaaatacctttgcttcaaagcatct
ctgcctttggccgccaagtgcagcgcagctcaagccttttactccgtcaggaactttgtt
ctgctctatttctttctgggacacattccaagagcatggatgtgtaaaagcctgagcctt
cacctggacagctctgcccaccccctggacagcatatctggactgctggatctctctctg
ctgtatctcctttggatcagcgccacctacctcctcttttcatggtacatgaccctgctg
ctcttcaggatcttcgtcactgaggcctacagctttcctgtccagtccacctttactgaa
gaagctcctcagtgtcttcctaaagttctgtcagaaaagcagccgatgatcctgaagttt
ctagctctgcaggacctttccctgctgtcgcagcattcgccatcacgccgcagccaggtc
ttcagcttgagtcagccaggaggacacccccacaactggaacgccatcagtaaggagtgc
ctgtctctcctggccgacctgacccagagattggtgtcgtatcacgaaacggtggcgact
aacggcaggaccaagtccctgtccagcggcagtgacaggaaaacgtcgtccgagtcatcg
ggtacggaggacttggcgagctgcagacccaccttcctgatgaaaactccagcttcggtc
tttctgcgctccgtgggggcgggaccacagagccctctgacctcacccttcacccctgac
ctcgacagcccttttgcctcccccactctgcggcaactgacatctccggtggatccgggc
tcgccgtggcatggcgtggtgcagagcccccacgtgatgaggagggcgccgaaactctgg
tccacttccacagattcacagaggaatggcagccccccagcttcacccgccaccctcccc
actccaaaaccagaatcttccaagccaagttttctggctcagttcttccagaaccgaaga
gagcaggttaagcatttcatggcaaagcggatgctggtaatgtatttgtttacaaagctt
ccagaagcttccagtcaggctctgtttgcagacggccaggctcatatctgggctttagac
gggctgtcttacctcgttcaagcatccttcacagaagaccagtttggagttgtacagacg
acattacccagcattctcagctccatgttgctgttgcaggaggctgtggatcgacacttc
aagctgcctcacgcctccagtaaacccgtcaggtccaccatcagtctgggggactcctcc
cacaaaacactgcgctttgcgctcagagccacgctaaagaccgccatctacaggataacc
accaccttcggagcccacttacatgccgttcagttgtctgcagagcaccggaagagactg
cagcactttctggagtacaaggagtga
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