Oryzias latipes (Japanese medaka): 101170227
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Entry
101170227 CDS
T02443
Symbol
vcl
Name
(RefSeq) vinculin isoform X1
KO
K05700
vinculin
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04510
Focal adhesion
ola04517
IgSF CAM signaling
ola04518
Integrin signaling
ola04519
Cadherin signaling
ola04520
Adherens junction
ola04810
Regulation of actin cytoskeleton
ola04820
Cytoskeleton in muscle cells
ola05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101170227 (vcl)
04518 Integrin signaling
101170227 (vcl)
04519 Cadherin signaling
101170227 (vcl)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101170227 (vcl)
04520 Adherens junction
101170227 (vcl)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101170227 (vcl)
04810 Regulation of actin cytoskeleton
101170227 (vcl)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
101170227 (vcl)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ola04812
]
101170227 (vcl)
04147 Exosome [BR:
ola04147
]
101170227 (vcl)
Cytoskeleton proteins [BR:
ola04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
101170227 (vcl)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101170227 (vcl)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
Mob_Pre
Talin_R4
Motif
Other DBs
NCBI-GeneID:
101170227
NCBI-ProteinID:
XP_011486515
LinkDB
All DBs
Position
19:10046867..10071892
Genome browser
AA seq
1067 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLSAPVATVQAAVSNLVRVGKE
TVQTTEDQIMKRDMQPAFIKVENACAKLVQAASMLKSDPYAVPARDFLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLITYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPILISGIKIFVTTKTSGGQGVEEALKNRNFTFEKMSAE
INEIIRVLQLTSWDEDAWANKKDTESMKRALGLIDSKMAHAKNWLRDPNAPPGDAGEQAI
RQILDEAGKVGELCTGKERRDIVGTAKTLGQITDQVSEMRARGQGASPVAVQKAQQVSHG
LDVLTNKVENAARKLEAMTNSKQAIAKKIDAAQSWLADPKGGPEGEENIKALLTEAKKIA
DMCDDPKEREDALRSIKELATLTARLSDLRKMGKGDTPEARALAKQIATALQNLQSKTNK
IVTNSRPAKAAVHLEGKIEQAQRWIDNPTVDDNGVGQTAIRGLAAEGRRLANALPGPYRQ
ELMGKCERVEQLMAQLADLAARGEGDSPQARAVAQQLQEALKDLKGQMQEAMTQEVSDIF
SDTTTPIKLLAVAATAPLDAPNRNEVFDERAANFENHANKLGATAEKAAAVGTANKSTVE
GIQAAVKSTRDLTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDT
KSLLDASEEAIKNDLDKCRVAMTNHQPQMLVAGATSIARRANRILLVAKREVENSEDPKF
REVVKAASDELSQTISPMVMSAKAVAAKIQDPSLQKGFLDSGFKILGAVAKVREAFQPPE
PDFPPPPPELDQLNLNDEAAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGDVVNEPMM
VAAKQLHDEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASD
EVTKMAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQA
TEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLHWVRKTPWYQ
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttttcacacgaagactatagaaagtatcctggagccggtggctcagcaaata
tcccatctggtgataatgcacgaggaaggtgaagttgacggaaaggcgataccagatcta
tcggcgccggtggctacggtgcaggcggccgttagcaacctcgtccgggttgggaaggag
accgttcaaactacagaagaccagattatgaaaagggatatgcaacctgcttttatcaaa
gtggagaatgcatgcgcaaagctggtgcaggctgcttccatgctcaaatcggacccatac
gccgttcctgctcgggattttctgatcgatggttcccggggcatcctgtctggaacatct
gatctgcttctgacctttgatgaagctgaggtccgtaaaatcatccgggtgtgcaaaggg
atcctggagtatctgactgtggcagaggtggtagaatcaatggaggacttgatcacgtac
acaaagaacctcggtccaggtatgacaaagatggcgaagatgatagatgagcggcagcag
gagctcacgcatcaggagcatcgggtgatgctggtcaactccatgaacacagtcaaggag
ctgctgcccatcctcatctcaggtatcaaaatctttgtaacaaccaagacgtcaggtgga
caaggtgtggaagaggctttgaagaaccgcaacttcacctttgagaagatgagcgctgag
atcaatgagatcattcgggtgctgcagcttacgtcctgggacgaggacgcctgggccaac
aagaaggacacagaatccatgaagagggctctggggcttattgactcaaagatggcacat
gccaaaaactggctaagggacccaaatgctccaccaggagatgcaggggaacaggccatc
cgtcagattctggacgaagcgggaaaagtcggggaattgtgtacgggaaaggagcgcagg
gatattgtgggcactgcaaaaaccctgggccagattacagatcaggtgtctgaaatgaga
gccagaggtcaaggagcatccccagtggccgtgcagaaggcccagcaggtttcccacggg
ctcgacgtgctgacaaacaaggttgagaatgcggctcgcaaactggaggccatgacgaac
tctaagcaggccatcgctaagaagattgatgctgcacaaagctggcttgcagatcccaaa
ggtggccctgagggagaagagaacatcaaggctttgctcacagaagctaagaagattgct
gacatgtgtgatgaccccaaggaaagagaagatgcgttgcgctctattaaagagctcgct
actctgaccgccagactgtctgacctcagaaaaatgggtaaaggtgacacacctgaggcc
agagctttggccaaacagatcgctacagctctgcagaatctgcagtccaaaaccaacaaa
atcgtgacaaacagccggcctgcaaaggcagctgtgcacttggagggaaagatcgagcaa
gcacagcgctggatcgacaatcccaccgtggatgacaatggcgtgggccagacagctatc
cgtggccttgcagcagagggccgcaggctggccaacgctcttcctggcccataccgccag
gagctaatgggtaagtgcgagcgggtggagcagctcatggcccagctggccgacctggca
gcccgaggggaaggggactcccctcaggcacgtgctgtggctcaacaactccaagaggct
ttaaaagacctcaaaggacagatgcaggaggcaatgactcaggaggtgtccgacattttc
agtgacacaaccacccccattaagttgttggcagtagctgctactgcccctctggatgct
cctaacagaaatgaggtctttgacgaaagagctgccaactttgagaaccatgccaataag
ctgggagccacggcggagaaggcggctgctgttggcacggctaacaaaagcacagtggag
ggaatacaggctgccgtcaagtcaaccagagacttgacaccacaagttgtatctgctgct
cggattttgctgagaaaccccggcaaccaagctgcttatgaacattttgagaccatgaag
aatcagtggatcgacaatgtcgagaaaatgacaggtctggtggatgaagccatcgacaca
aagtctctgctggacgcctcagaggaagccataaagaacgacttggataagtgccgcgtg
gccatgaccaaccaccagcctcagatgttagtggctggtgcgaccagcatcgcccgcaga
gccaaccgcatcctgctggtggccaaacgagaggtggagaactctgaggatccaaaattc
agggaggtggtgaaggctgcatccgatgaactgagccagacaatttctcctatggtgatg
agtgccaaggcagtggctgcaaaaatccaagatccgagtcttcagaaaggctttctggac
tctggttttaagatcctcggtgctgtggcaaaggtcagggaggccttccagcccccagag
ccagacttcccaccccctcctcctgagctggatcagcttaatctcaacgatgaagcagcg
cctcccaagcctcctcttccagagggtgaagtcccacccccccgacctcctcccccagag
gaaaaggacgaggagttccccgaacagaaagctggtgacgtggtgaacgagccgatgatg
gtggccgccaagcagcttcacgatgaagctcgcaagtggtcaagcaaaggaaatgacatc
attggtgctgccaagcgaatggccctgctcatggcagagatgtcccgcctggtgcgtgga
ggtagcggaaacaagcgtgctctcatccagtgcgccaaggacatcgccaaggcttccgat
gaggtcaccaagatggccaaggaggtcgctaagcagtgcactgacaaacggatccggacc
aacctgctccaggtgtgtgagcgcattcccaccatcagcacccaactcaaaatcctgtct
actgtcaaagccaccatgttgggtcgtaccaacatcagcgaggaggagtcggaacaggcg
actgagatgttggtccacaatgctcagaacctcatgcaatctgtgaaggagacggtaagg
gaggcagaagccgcttccattaagatccggacagacgcgggcttcaccctccactgggtg
aggaagaccccctggtaccagtaa
DBGET
integrated database retrieval system
