Oryzias latipes (Japanese medaka): 101170287
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Entry
101170287 CDS
T02443
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101170287 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101170287 (supt5h)
03019 Messenger RNA biogenesis [BR:
ola03019
]
101170287 (supt5h)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101170287 (supt5h)
RNA polymerase I system
101170287 (supt5h)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
101170287 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
101170287
NCBI-ProteinID:
XP_023817605
LinkDB
All DBs
Position
13:946632..959963
Genome browser
AA seq
1083 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEAEENEEETGSPVGSDKVAEEEGEDLDDEDDYDEEEE
EDEDDERPRKKPKHGGFILDEADVDDEDDEDDHWADEGEDILEKANEEAEVSNLDRVVLE
DDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSAGEHYYGGTEELSDDITQQQLLPGVKD
PNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVK
AAIEGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYV
EPSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDG
DFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITILPKHEDLKDPLEFPAHELKKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHHGGGGAQQRGGGGGGMGRGRGRRDNELIGQTVRICQGPYKGYI
GVVKDATESTARVELHSTCQTISVDRQRLATMGAKRHSGMTSTHGRTPIYGSQTPVYGSG
SRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFGFD
DEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGS
YQPSPSPQSYHQVVPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPG
GYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQMGVIRSVSGAMCSVFMQESEKVV
SISSDQLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGR
LEH
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagcgaggacagtgatttctccgacaaccagagcgagcgcagcagtgacgga
gaggccgaggaggcggaggagaatgaggaggagacgggcagccctgtgggcagcgacaaa
gtagcagaggaggaaggggaggacctggatgatgaggatgattatgatgaagaggaggaa
gaggacgaggatgatgagcgccccaggaagaagccaaagcacggagggttcatcctggat
gaagctgatgtggacgatgaggatgatgaagacgatcattgggcggatgaaggtgaagac
attctggagaaagctaacgaagaggctgaagtgtccaacttggaccgcgtggttctggaa
gatgatcattctggatccagacggctgcagaacctctggagggactccagagaagaggcg
ctgggagaatactacatgaggaagtatgccaagtcctcagccggagagcattactatggc
ggcaccgaggagctttctgatgacatcacccagcagcagctgcttcctggtgtcaaagat
cccaacctgtggacggtcaagtgcaagatcggagaggagagggcgaccgccatcgctctg
atgaggaagttcatcgcctaccagttcaccgacacaccgctgcagatcaagtcggtggtg
gcgcccgatcacgtcaaaggctacatctacgtggagtcctacaagcagacgcacgtcaag
gcggccatcgagggcatcggcaacctgaggatgggcttctggaaccagcagatggttccc
atcaaagagatgacggacgtcctgaaggtggtcaaggaggtcaccaacctgaagcccaag
tcctgggtccgtctgaagagaggcctgtacaaggacgacatcgcccaggtggactacgtg
gagcccagtcagaacaccatctccctgaagatgattcctcggatagacctggaccgcatc
aaggccaagatgagcctgaaagactggtttgcaaagaggaagaagttcaagaggcctgct
cagaggctgtttgatgctgagaagatcaggtctctggggggcgaggtcagccacgacgga
gacttcatgatctttgagggcaaccgttacagccgcaaaggattcctgttcaagagcttc
gccatgtcagctgtgatcaccgacggcgtgaagcccacgctctcagagctggagaagttc
gaggaccagccggaggggatcgacctggaggtggtcacggagtcgggtaaggagcgagag
cacaacctgcaggccggagacaacgtggaggtctgcgagggagagctgatcaacctgcag
ggcaagatcctgagcgtggacggcaacaagatcaccatcctgcccaaacacgaagacctg
aaggatcctctggagttcccggctcacgagctcaagaagtatttccggatgggcgaccac
gtgaaggtgatcgccggccgttacgagggcgacaccggcctgatcgtccgagtggaggag
aactttgtcatcctgttctctgacctcaccatgcatgagctgaaggttctgcccagagac
ctgcagctctgctctgagaccgcgtccggcgttgacgctggcgggcagcacgagtggggc
gagctggtccagctggacccgcagacggtcggcgtcatcgtccgcctggagagagaaacc
ttccaggtgctcaacatgcacgggaaggtgatgacagttcgccaccaggcggtcaaccgc
aggaaggacaaccgctttgccgtggctctggactccgaacagaacaacattcacgtcaag
gacatcgtcaaggtcattgacgggccgcactcgggccgtgaaggagagatccgccacctc
ttccggggcttcgccttccttcactgcaagaagctggtggagaacggaggcatgttcgtc
tgcaagacccggcacctggttctggccggaggctccaagcccagagacgtgaccaacttc
acggtggggggctttgctcccatgagtccccgcatcagcagccccatgcaccacggcggc
ggaggagctcagcagaggggaggtggcgggggaggaatggggcggggccgagggcggcga
gacaacgagctgattggtcagacggttcgcatctgccagggcccctacaaaggttacatt
ggcgtggtgaaggacgccacggagtccacggcccgggtggagctgcactccacctgccag
accatctctgtggaccgacagcggttggccaccatgggagccaagaggcacagcgggatg
acctccacccacgggcgcacccctatttacggctcccagacccccgtgtacggctccggc
tccaggacccccatgtacggatcccagacccccctgcatgacggaagccgcacgccccac
tacggctcccagaccccactgcacgatggcagcaggacgccagggcagagcggagcctgg
gaccccagcaaccccaacaccccctccaggaacgatgaggagtacgactttggcttcgac
gacgagccctccccctccccccagggctatggaggcacccccaacccgcagacccctggt
taccccgaagtcccttcccctcaggtcaaccctcagtacaacccccagacccctggcaca
cccgccatgtacaacacagagcagtactcgccgtacgccgccccttcccctcagggctcc
taccagcccagccccagccctcagagctaccaccaggtggtgccgtcgcccgtcggatac
caaaacacgcactctccggccagctaccaccccaccccctcccccatggcgtaccaggcc
agtcccagccccagccctgttggttacagtcccatgacgcccggagcgccatcccctggg
ggctacaacccccacacccccggctccaacatcgagcagggcagcagcgactgggtgacc
accgacatcctggtccgggtcaaagactccttcatggacctgatgggacagatgggagtc
atcaggagcgtctcgggggccatgtgctccgtcttcatgcaggagtctgagaaggtggtg
agcatcagcagcgatcagctggagcccgtcacccccaccaagaacaacaaggtgaaggtg
atcctgggggaggaccgcgaggcgacggggatcctgctgagcatcgacggagacgacgga
atcgtgcgcatggagctggacgaccagctgaagatcctgaacctgaggttcctggggcgc
ctggagcactga
DBGET
integrated database retrieval system
