Oryzias latipes (Japanese medaka): 101170306
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Entry
101170306 CDS
T02443
Symbol
faap100
Name
(RefSeq) Fanconi anemia core complex-associated protein 100
KO
K10993
fanconi anemia core complex 100 kDa subunit
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
101170306 (faap100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101170306 (faap100)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
101170306 (faap100)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCAA
TRIP13_N
DUF7433
Motif
Other DBs
NCBI-GeneID:
101170306
NCBI-ProteinID:
XP_004080267
UniProt:
H2LF04
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Position
19:3793571..3799734
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AA seq
823 aa
AA seq
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MEGRCAVDTWTEFGFLRASNTPKVKLVVGTHVVVCTGDEEVYVFNVQDKRFAAVLQFPEG
VVDLIESHDKHLLVACCSGVYCVDLQPLLVRPHGSSASSDPAELKISSEFCVLGGRGLSS
LLLVGPLLLTLGQRNTSWLLTLYKTAQQKQPGSYEMLRSFSLPRLSPVSQGSAKTEHTRR
SLLICVHSGRPTLPVPSGSHLTHRQFGIEPVLFKLLFGVDAALAKSPVVIWGLPDGRLCF
LPLHLSGSQIRVLHSLEQPVAFVGASVVSETDPGQAQCLVAVGERGRVVLIRTDRSGPET
GGSTAGFAERCVPGPVKCCCVDNNRLYYSTGSDLLTLNLLGSSGRQDAAVQIPTSLNVCR
VIALAVHTCNEAGEVQLIGLSDRGTLSGIKLPNGEQEVGMSKLHASQVGRSVRDLLSAIG
DICERASALKTVIKSQKLTLKRLNQVVNTCFLLKSPEEHLPTEEKPIRCCATVDWSRLLL
KDSLNLTCVLENSSSCTLERGWTLCISVCPLSCSPVEAESSNFTFPILNLSPGGALEVSV
PVAAAGGAAFPLTVNCSLAFSLLGVLEEQELESFAGLQSSFFTFSLNSLTVDWLHALQVI
GPTAAQRSRATTDAVQAFLSSRQMKRRQGPDGGGESSAVYSACVWVSLELLRDTLRTRML
GLGTSEEESASISLSLLNWLLFESHGGVKMGRRGDQDGTSSSEVHARSPNEATVKLSVKE
VNEENSVKEAHVEVQIESSSVAAVCGLRHAVLRRLQSLLAMVPVETAAAKMVQISDLKSA
LQRAEIQQSGISEALSSDVSSAQMNPFLLDVYQKLRENRLLMI
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggaaggacgctgcgctgttgacacctggaccgagtttgggtttttgagagcatcaaac
accccgaaggtaaagctcgtggtcgggacacacgtagtcgtctgcactggagatgaggag
gtgtatgtttttaatgttcaggacaagagattcgcggcagttctccagtttccggaagga
gtggttgatctgattgagagccatgacaaacatcttctggttgcatgttgcagtggagtc
tattgtgttgatttgcagcctctgttagtcaggcctcacggctcctccgcatcctcagat
ccagccgagctgaaaatctcctctgagttctgtgtgctgggcggacgtggtctgtcgtcg
ctgctcctggtcggccctttgctcctcactctcggccagagaaatacgtcctggttgttg
actttgtataaaaccgctcaacaaaagcagcccggcagctatgagatgctccgctccttc
agtctgccgcggctctcgccggtttcacagggcagcgctaagacagaacacacaaggagg
tctctgctgatctgtgtccattctgggcgtcctacacttcctgtacccagtggttcacac
ttaacacatagacagttcggcatcgaacctgtcctctttaaacttttatttggagttgac
gctgctctggccaaatcaccggttgtaatttggggcctgcccgatggacgtctatgtttc
ctccctctacacctttccgggtctcagatacgggtcctccacagcctggagcagccagtc
gccttcgttggagcatcggttgttagtgagacggacccggggcaggcacagtgtttggtg
gcggtgggtgaaagaggcagggtggttctgatcaggacggacaggagcgggccggagacg
ggcggcagtactgctggatttgctgagcggtgtgtgccagggcctgtgaagtgttgctgc
gtggataacaaccgtctgtactacagcaccgggtcagacctgctcacattaaatctgctg
ggatcctctggaagacaggatgctgcggtccaaatccccaccagtctaaacgtgtgcaga
gtcatcgccttggctgtacatacatgcaatgaagcaggtgaagttcagctgataggactg
tctgacagagggacgctttcggggattaaattacccaacggtgaacaggaagtggggatg
tccaaacttcatgcctcgcaggtcggccgcagtgtaagggaccttttgtccgccatagga
gatatttgtgaaagagcatctgcactgaaaacggtcatcaaatcccaaaaattaacgctc
aagcggctaaatcaggtcgtcaacacttgtttcttgctgaaatcccccgaggagcatctt
ccaaccgaagagaagccgatcagatgttgtgccacagtcgactggagcagactgcttcta
aaggactctttgaatctcacgtgcgtcttggaaaactcaagttcttgcactctggagcga
ggatggactctgtgcatcagcgtctgtcctctttcttgttcacccgtagaagcagagtcc
tcaaatttcactttcccgatcctcaatctgtctccaggaggagcgttggaagtgtccgtg
ccggttgcagctgcaggtggcgccgccttccccttgacggtgaactgttcgcttgccttc
tccctcttgggtgtcctggaagagcaggaactggagagctttgctggcttgcagagcagt
tttttcaccttctccttgaattccctgacagtggactggttgcacgctttgcaagtgatc
gggcccacggctgcgcagagatcacgcgcaacaaccgatgccgtccaggcgtttcttagc
tcacgccaaatgaagcggcgccaaggaccagacggaggcggagagagctccgccgtgtac
tctgcatgcgtttgggtgtcactagagttactgagggacacgctgaggacaaggatgttg
ggcttgggcaccagtgaagaagagtctgcctccatctctctgtctcttctcaactggctg
ttatttgagagtcatggaggagtgaagatggggcgcagaggagatcaggatggcacgagc
agctcagaggttcacgcacgttctcctaacgaagccacagtcaagctgagcgtcaaagag
gtgaacgaggagaactctgttaaggaagcccacgtagaagttcagattgagagctcgtct
gtagcggcggtgtgtggcctgcgtcacgctgtgctgcggcgtttgcagagtttgttggcg
atggttcccgtggaaacggctgcagccaaaatggtccagatttcggatttaaaatcagcg
cttcaaagggctgagattcagcagagcggaatctcagaagctctcagctcagacgtgtcc
tccgctcagatgaacccgtttcttctggacgtttaccagaagctcagagagaaccgcctc
ctcatgatttaa
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