Oryzias latipes (Japanese medaka): 101170316
Help
Entry
101170316 CDS
T02443
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04140
Autophagy - animal
ola04148
Efferocytosis
ola05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101170316 (vps39)
04148 Efferocytosis
101170316 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101170316 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101170316 (vps39)
Membrane trafficking [BR:
ola04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101170316 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
EAD11
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
101170316
NCBI-ProteinID:
XP_004082797
UniProt:
H2MV48
LinkDB
All DBs
Position
22:complement(24617597..24632787)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAYESLPILEKLPLQIDCLAAWEDGLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFTCDLQLAASGE
ERLRMCVAVKKKLQLFYWKDREFHELQGDLGVPDIPKSMAWCENSICVGFKRDYYLIRLD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTVEPRLLVQSVELQRPRFITSAGPNVVYVASNHFVWRLVPVPI
ANQIRQLLQDKQFELALQLAMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDESMQVFAKL
GTDPTHVIGLYPELLPSDYRRQLHYPNPVPSLSGPELEKAHLALIDYLTQKRSHLVKQLN
DSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEESE
YILKKAHKYSELIILYEKKGLHRKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLGI
VFEFSPWVLKLSPEDGLKIFTEDLPEVEALPRDKVLQFLKEGFEELAIPYLEHIIHVWEE
QGPRFHNVLIQLYLGRVQSLMKQYLNSLPEGVPVLPAGQESGQLGEFRSKLLSFLEVSSS
YEPTSLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTCTAEEYCQRHYNRQVEA
DRDVYLSLLRMYLSPPDAHCLGPIKMELSEPQANLQAALQVLELHHSKLDTTKAINLLPA
NTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKICR
VCKKKIGNSAFARYPNGVVVHYFCCKDRSACPTEQ
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctacgagtccctgcccattctggaaaaactccccctccagatcgactgt
ctcgccgcctgggaggacgggctgctcgtaggaacaaaaccaggacatctcctcctgtac
cggatcaagaaagatgctggaaccaaccgctttgaagtcactttggaaaagtccaataag
aacttttcaaagaagatccagcagctttatgtggtctctcagtacaaaatcctggtcagc
cttctggagaacaacatccacgttcatgacctcctgaccttccagcagatcaccgtggtg
tccaaagccaaaggagccacgctgttcacctgcgacctgcagctcgccgcctcgggggag
gagcggctccgaatgtgcgtggcggtcaagaagaagctccagctgttctactggaaggac
cgggagttccacgagctgcagggagacctgggcgttccggacattcccaaatccatggcg
tggtgcgaaaactccatatgtgtgggcttcaaacgggactattacctcatccggctcgat
ggcagaggctccatcaaggagcttttccccaccgggaagcagctggagcctctggttgcc
ccactggctgatgggaaagtggcggtgggtcaggatgacctcactgttgttctgaacgag
gaaggagtttgcacgcagaagtgcgccctaaactggacagatatccccatcgccatggag
caccagcccccttacatcatcgccgttcttcctcgatacgtggagatacgaaccgttgag
ccgaggctgctggtgcagagcgtggagctgcagcgaccgcgcttcatcacctcggcggga
cccaacgttgtgtatgtagccagcaaccacttcgtgtggcgtctggttcccgtgccgata
gccaaccagatccggcagcttcttcaggacaagcagtttgagctggctctccagctggcg
atgaaggacgactctgacggagacaagaagcagcagattcatcacatccagaatctttac
gccttcaacctgttttgccagaaaagattcgacgagtccatgcaggtgtttgccaaactc
ggcacagatcccacccatgtgatcggactgtacccagagttactgccgtctgattaccgc
cggcagctgcactaccccaacccggtccccagcctttccgggccggagctggagaaggct
cacctggctctgatcgattacctcacgcagaaacgaagtcacctggtcaagcagctgaac
gactccgacccgtccaccacgtcgccgctcatggagggcacgcccaccatcaaaagccgc
aaaaagctgctgcagatcattgacaccaccctactgaagtgttacttgcataccaacgtg
gccctcgtctcccccctgctgcgcttggagaacaaccactgccacatcgaggagagcgag
tacatcctgaagaaggcgcacaagtacagcgagctgatcattctgtacgagaagaagggc
ctgcaccggaaagctctgcaggttcttctggaccagtccaccaaggccaactcccccctg
aagggccacgagcgcaccgtgcagtacctgcagaggctgggggtggagaacctgggcatc
gtctttgagttttctccatgggtgctgaaactttcaccagaagacggcctgaagattttc
acagaggatctccctgaggtggaggctctgccccgtgacaaggtgctgcagttcctgaag
gagggcttcgaggagctggccatcccgtacctggagcacatcatccacgtgtgggaggag
cagggcccccgcttccacaacgtgctgatccagctgtacctggggagggtccagagcctc
atgaagcagtacctgaactctctgcctgaaggggttcctgtgctgcctgcggggcaggag
tcggggcagctgggggaattccggagcaaactgctctcctttctggaggtttcgtccagc
tacgagcccaccagcctgatcagtgacttcccctttgacgggctgctggaggagcgggcg
ctcctgctgggccgcatggggaagcacgagcaggcgctcttcatctacgtgcacgtcctg
aaagacacgtgcacggcagaggagtactgccagcggcattacaacagacaggtggaggca
gacagagacgtgtacctgtccctgctgcgcatgtacctgtccccccccgacgcccactgc
ctgggacccatcaagatggagctgtcggagcctcaggccaacctgcaggcggcgctgcag
gtcctggagctgcaccacagcaagctggacaccaccaaggccatcaacctgctgccagcg
aacacgcagatccgagagatccgggttttcctggagagcgtcctggaggagaaggctcag
aggaaacgctgcaaccaggttctgaagagcctgctgcaggccgagttcctgcgggtgcag
gaggagcggatcttccaccagcaggtcaaatgtgtcatcacagaagagaagatctgcaga
gtgtgcaagaagaagatcgggaacagtgcctttgccaggtatcctaacggcgtggtcgtt
cactatttctgctgcaaagatcgaagcgcctgtcccactgagcagtga
DBGET
integrated database retrieval system
