Oryzias latipes (Japanese medaka): 101170752
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Entry
101170752 CDS
T02443
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101170752 (ptbp1b)
03041 Spliceosome [BR:
ola03041
]
101170752 (ptbp1b)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
101170752 (ptbp1b)
Spliceosome [BR:
ola03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
101170752 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
101170752
NCBI-ProteinID:
XP_011472627
UniProt:
U6C2U3
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All DBs
Position
4:complement(24532152..24558012)
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AA seq
562 aa
AA seq
DB search
MCSGRGVPRPLAGTCCFAVPCCAMDGSVHQDLTVGTKRGSDELLSSVSNGPYIMNTTANG
NDSKKFKGDLRGPNVPSRVLHIRKLPIDITETEVISLGLPFGDVTNLLMLKAKNQAFLEM
NSEEAAQNMVGYYSTVMPIIRQQPVFVQFSNHKELKTDNSPNQERAQAALRALSSSHVDT
AALVVAPSSVLRVVVENLLYPVSLDALCQIFSKFGTVLRIIVFTKNNQFQALLQYAEGAS
AQAAKVSLDGQNIYNGCCTLRISFSKLTTLNVKYNNDKSRDFTRPDLPSGDGQPTMEHQA
MATAFGPGIISASPYTGATHAFPPAFALQPVSSPYAGLTMSGLPGTLASLTLPAGARLGF
PAIPAGHSVVLVSNLNAERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQL
AMSHLNGQRLHGRPLRITLSKHTSVQLPREGHEDQGLTKDYSSSPLHRFKKPGSKNYSNI
FPPSATLHLSNIPPSVVEDDLKMLFSSSGAVVKAFKFFQKDHKMALIQMGSVEEAIECLI
QLHNHDLGENHHLRVSFSKSSI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagtggacggggcgtcccgcggccgctggctggaacctgttgcttcgcagttccg
tgttgtgcaatggacggcagtgtccaccaagatttaacagttggtactaagagaggatct
gacgaacttttatccagcgtctccaacggcccgtatatcatgaacaccacagccaatggc
aatgacagcaagaagttcaaaggtgacttaaggggtcccaacgtgccgtccagggtcctg
cacatacgcaagcttcccatcgacatcacagagaccgaggtcatcagcctcggcctgcct
ttcggcgacgtcaccaacctgctgatgctgaaagccaaaaaccaggccttcttggagatg
aactcggaggaagcggcgcagaacatggtgggttattactccacagtgatgccgattatc
cgacaacaaccagtctttgtccagttctccaaccacaaggagctgaaaactgacaactcc
cccaaccaagagagggcccaggcggctctgcgggccctgagctcgtctcatgtggacact
gcggcgctggtggtggctccgagctccgtcctgagggtggtggtggagaatctgctgtat
cccgtctccttggacgcactgtgccagatcttttcaaagttcggcactgtgctgaggatc
atcgttttcaccaagaacaaccagttccaggctctgctgcagtatgctgaaggggcgtcg
gctcaggcggccaaagtgtctctggatgggcagaacatctacaacggctgctgcactctg
aggatcagcttctccaagctgacgaccctcaacgtgaaatacaacaacgacaagagccgc
gacttcaccaggccggacctgccgtccggagacggccagcccacgatggagcaccaagcc
atggccacagccttcggtcctggcatcatctctgcttcaccgtacacgggagcaactcat
gctttcccaccagcctttgctctccagccagtctcctccccctatgcaggcctgacgatg
tccggtctgcccggaacgctggcctctctgacgctccctgctggggccaggctgggattc
ccagccatccctgcaggacactccgtcgtgctggtcagcaaccttaacgctgagagagtt
acgccccactgcctctttattctcttcggtgtttatggcgacgtgatgcgagtgaagatt
ctcttcaacaagaaggagaacgctctggttcagatgagcgacagcacccaggctcagcta
gcgatgagccatctgaatggtcagcggctgcatgggaggcctcttcgcatcactttgtcc
aaacacacgagtgtgcagctcccccgggaaggtcacgaggaccagggtctgaccaaagac
tacagcagctcccccctgcaccgcttcaaaaagcctggatctaagaactattccaacatt
tttccaccgtcggccaccttgcacctttccaacatccccccctctgtggttgaagatgat
ctaaagatgctgttttccagttcaggagctgtggttaaagccttcaagttctttcagaag
gaccataaaatggctctgatccagatgggctctgtggaggaggccattgagtgtctcatc
cagctccacaaccacgacctgggagagaaccaccacctgcgggtttccttctcaaagtcc
tctatctga
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