Oryzias latipes (Japanese medaka): 101170823
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Entry
101170823 CDS
T02443
Name
(RefSeq) collagen alpha-1(XXVIII) chain isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ola01002
]
101170823
Peptidases and inhibitors [BR:
ola01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
101170823
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
DUF1194
Motif
Other DBs
NCBI-GeneID:
101170823
NCBI-ProteinID:
XP_023821148
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Position
2:16334588..16376921
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AA seq
1203 aa
AA seq
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MDPFLHWLLLFWGLQGLLAQDHEDEIVKTKKRVRQSPNSISLNEKSALDDDCRMDLAFLV
DSSESAKDNHAQEKRFVIDVVDRLQSARLQSGRGLGFRAALLQYSSHVIIERNFSNWRGV
EDFKARVTPMAYIGHGTYTTYAITNLTRIYLEESSINSIKLAILLFDGISHPRNPDISAA
MADAMNQGIKFFTIGITPEANEAANIAHLSRIAGSSRNVHNLQDAGIVAKVIQEIVAVAD
EGCPTVQSLCKCEKGERGPAGPAGKKGRSGDDGSPGAKGQKGESGLGGLPGREGAEGKPG
YKGEKGERGECGTPGVKGDRGPEGSLGPRGNRGLQGLPGPTGDVGPEGLMGKKGERGLPG
PSGIQGETGIGLPGPKGDVGFQGQPGPPGPPGIGESGPPGPQGPQGAPGERGQIGEGLPG
PKGERGLEGPRGPRGQPGAGIKGDKGDFGPPGLPGPIGLPGVGIQGEKGTEGPRGPPGSR
GPQGEGKPGPKGDQGLPGEVGAQGERGAGEPGAKGEPGSPGMSGLPGLPGEDGAPGQKGE
PGAVGIRGPEGAPGIGTQGEKGDQGQRGIRGLSGPPGIAGPSGPKGEPGAQGRLGLPGPP
GRFITGPKGDVGPSGPPGPIGETGYGLPGPKGDRGDPGFPGPFGPKGEGYPGPMGPPGLP
GLPGEPGLEGVGIPGPKGDVGFRGLPGLPGPPGEGLQGPPGNPGRPGPPGPTGPQGQGVQ
GPKGEQGSQGVSGPRGVPGEGFPGPKGDRGSSGERGLKGIKGETGDSGFPGEPGRAGVKG
EAGLTREDIIRMIKEICGCGIKCKERPMELVFVLDSSESVGPENFEIIKGFVMALVDRVT
VGSKATRIGLVLYSLDVNLVFDLPRYSTKEDIKLAIRSIAYMGEGTYTGTAIRKATQEAF
SRSREGVSKVAIVITDGQTDKREPVKLDVAVREAHAANIEMFALGIVNTSDPTRDDFLRE
LNLIASDPDKEHMFLIDDFNTLPTLESKLVSQFCEDENGALIYNQITNGYGNNAYNGYNS
NLINAGKYDTGGYGYRPVPGQETANNRQTDFNSGVGSQSQQGGEGGGRSVSKETSNLGKE
RGDTFTRDVFDYETPPPSTEDSSRNRGSSSSSSSSSTNINPSSSGVSVQTKPALPKETVP
LDPRCSLVLVPGTCRDYNIRWYYDKQANACAQFWYGGCNGNGNRFDTEEECKRTCVLGRT
TGG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atggacccctttctgcactggctcctgctcttttggggacttcaaggtctgctggcacaa
gatcatgaagacgagattgtaaagaccaagaaaagagtcagacagtcgcctaattccata
tcactaaatgagaaatctgccctcgacgatgactgcaggatggacttggcttttctggtt
gacagctcagagagcgccaaagacaaccatgcccaggagaagcgcttcgtcattgacgtg
gtggaccgcctgcaaagtgcccggctgcagtcgggccgtggactcggctttcgagctgct
ctactacagtacagcagccatgtcatcatagagcggaacttcagcaattggaggggcgtt
gaagacttcaaggctagagttactccaatggcttacatcggccacggcacctacacgacc
tacgcgatcactaacctcacccgcatttacctagaggaatcgagcatcaacagcatcaag
ttggccatcctgctctttgatggcatctcccaccccaggaaccccgacatatctgcagcc
atggcagacgcaatgaaccagggaattaagttcttcacaatagggatcactcctgaagcc
aatgaggccgccaacatcgctcatctgagtcggatcgctggatcttcccgcaatgtgcac
aacctgcaggatgcaggcattgtggcaaaagtcatccaggagattgtggcagtcgcagat
gaagggtgtccaacggttcagagcctgtgcaaatgtgagaaaggcgagaggggacctgcc
ggccctgctggtaaaaagggtcgctctggagatgatggtagtcctggtgcaaaaggtcaa
aagggtgaaagcggccttggtggacttccaggtcgggaaggagcggagggaaaacccgga
tacaaaggagaaaagggggagagaggagagtgtggcacacctggagtgaaaggagataga
ggtcctgaaggaagtcttggtccgagaggaaaccgtggacttcagggtctccctggccca
actggggatgtgggacctgaaggtctgatgggtaaaaagggggaaaggggacttcctggg
ccatctggaatccaaggagagacggggattggtcttccggggcccaagggtgatgttggt
ttccaggggcaaccagggcctccaggtcctccaggaattggtgaatctggaccaccggga
cctcaaggacctcagggagctccaggggagagaggacaaataggggaaggtctacctggg
ccgaagggtgaacggggcttggaggggccgcgggggcccagaggacagccgggcgccgga
atcaaaggagacaagggggattttggccctccaggtcttccggggcccattggcctccca
ggagttggcatacaaggagagaagggaaccgaaggcccaagaggtccgccggggagcaga
ggcccacaaggggagggaaagccaggacccaagggagatcaagggctgccaggtgaggtt
ggcgctcagggagaaaggggagccggtgagcccggagcgaagggagagccaggatcgccg
ggaatgtcgggtttgccggggctgccaggtgaagatggagccccaggacaaaagggtgag
ccaggagccgtcggcattaggggtccggagggggcccctgggattggcacacaaggtgaa
aagggagatcaaggccaaagaggcatacgaggtttgtcgggtccaccgggtatcgctgga
ccatcaggaccaaagggagagccaggagcacaaggaaggttgggtcttcctggtccaccg
ggacgcttcatcacaggacctaagggtgatgttggtcctagtggtccacctggcccaatt
ggggagactgggtatggacttccaggtccaaagggtgacagaggtgatccaggatttcca
ggtccattcggtcccaaaggggaaggatatccaggaccaatgggtcctcctggtttgcct
ggacttcccggagaacctggattggaaggagttggcattccaggtccaaagggagacgtt
ggtttccgaggtttgcctggtttacctggacctccaggtgaaggccttcaaggccctccg
gggaatcccggtcgaccgggtccaccaggaccaaccgggccacaaggacaaggagttcaa
ggtccaaagggtgaacagggttcccagggtgtgtccggaccaagaggagttccaggagag
ggttttcccgggcccaaaggggacagaggctcgtcaggggagaggggacttaagggcatc
aaaggagaaacgggagattctggatttccaggagaacctggccgagcaggggtcaaaggt
gaagccggcctcactagagaagacatcattcgaatgatcaaagagatctgcggttgtggg
atcaagtgtaaggagaggcccatggagctggtgttcgtcctcgacagctcagagagtgtt
gggcccgaaaacttcgaaatcatcaagggctttgtgatggcgctggtcgaccgagttacc
gttggaagcaaagccaccaggatcggcctggtcctgtacagcctggatgtgaatctggtt
ttcgacttgccccgctacagcaccaaggaggacatcaagctcgccatcaggagcatcgct
tacatgggggagggcacctacaccgggacagccatccgtaaagcgacgcaagaggccttt
tccaggtcacgagagggtgtcagcaaagtggccatcgtcatcaccgatggacaaacggac
aagcgagagccggtgaagctggatgtggccgtcagagaagcacacgctgccaacattgag
atgtttgctttggggattgttaacacctcggatccaacgagggacgacttcctgagagag
ctcaacctgatcgcctccgacccggacaaggagcacatgttcctcattgacgacttcaac
actctgccaactctggagtctaagttagtcagccagttctgcgaggacgagaacggagcg
ctgatttataaccagataaccaacggctacggcaacaatgcctacaatggctacaacagc
aatctgataaatgctgggaagtatgacaccggcggttacgggtaccggcccgttcccggc
caggagacggcgaacaacaggcagacggacttcaactctggcgtcgggtctcaaagccag
cagggaggagaaggaggaggccggagtgtttccaaggagacgtcaaacttaggaaaagag
cggggggacacatttacccgcgacgtgtttgactacgaaactccccctccctccactgaa
gactcctccagaaacagaggctcctcctcgtcatcctcctcctcctctacaaacataaat
ccatcgtcctcaggtgtttctgtgcagacgaagccagctcttcccaaagagaccgtcccg
ctagacccacgctgctccctggttctggtgccaggcacgtgccgggactacaacatccgc
tggtactacgacaagcaggccaacgcctgtgcgcagttttggtacggaggctgcaatggt
aacggaaaccgcttcgacaccgaggaggagtgcaagaggacgtgcgtgctgggcagaacc
acaggaggctga
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