Oryzias latipes (Japanese medaka): 101170887
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Entry
101170887 CDS
T02443
Name
(RefSeq) CCR4-NOT transcription complex subunit 2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101170887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101170887
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101170887
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101170887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101170887
NCBI-ProteinID:
XP_011489636
UniProt:
A0A3B3IE33
A0A3P9H8L2
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All DBs
Position
23:22963796..22975219
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AA seq
532 aa
AA seq
DB search
MFGANRKKFMEGGIESDYTDESSLYYSPQSMFPPHRADKDMLSSSSASSSGQLSQLGASL
YGPQSALGFPMRGMNSSSTPQLSRSGLNQSASQLSSTPSSGSLHTPPSPSRGILPMSSRS
VLNHNQQVGGPTGQTGGMGGERGGGGGGRSGGMGSPSRSSPSIIGMPKQQQARQPFTINS
MSGFGVNRNPGFNMNNSLSNNIFNGTDGSENVTGLDLSDFPALADRNRRDGGSNPTPLLN
PLAGRAPYVGMVTKPSSEQSQDFSIHNEDFPALPGPNYQTKDPTSSSEDNKTNLNSSGKS
TSSSDGPKFPGDKSSTPSNNNQQKKGIQVLPDGRVTNIPVGMVTDQFGMIGLLTFIRAAE
TDPGMVHLALGSDLTTLGLNLNSPENLYPKFSSPWASAPCRPQDIDFHVPSEYLTNIHIR
DKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPT
LKTNAYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaaccggaagaagtttatggagggagggatagagagcgactacacggac
gagtccagcctctattacagcccacagtccatgttccctcctcacagagccgacaaagac
atgttgtcgtcttcctctgcctcctcatcgggtcagctgtctcagctgggagccagtctg
tacgggcctcagagtgctctgggctttcccatgcgggggatgaacagcagctccacacct
cagctcagtcgaagcgggctcaaccagtcagccagtcagctctccagtactcccagttct
ggctctttgcacacgccgccctcgccgagcagaggcatcctgcccatgagcagccgcagc
gtcctgaaccacaaccagcaggtgggcgggccgacggggcaaacgggcgggatgggagga
gagaggggcggcggcggaggagggaggagcggcggcatgggcagccccagccggtcgtct
ccgagcatcatcggcatgcccaagcagcagcaggcgcggcagccgttcaccatcaacagt
atgtcaggatttggcgtgaacaggaacccaggcttcaacatgaacaactccctatccaac
aacatctttaacggcacagacggcagcgagaatgtgacgggcttggacctgtcagacttc
cccgcgttagccgaccgaaatcggagggacggaggttcaaatcccaccccattgctcaat
ccgctggccggtcgggcgccttacgttggcatggtaaccaagccatccagtgaacagtcg
caggacttctccatccacaacgaagacttccccgctctcccagggccaaattaccaaaca
aaagatcccaccagcagcagtgaagacaacaaaacgaatttgaactcgtcaggaaagtcc
acttccagctcggatggtccaaagtttccaggcgataagagttctactccaagcaacaac
aaccagcagaaaaaagggattcaggttcttcctgacgggcgagtgaccaacatccccgtc
ggcatggtaacagaccagttcggaatgatcggtttgctgacgttcatccgggcagcagag
acggatccggggatggttcatctggcgctgggctccgacttaaccacactcgggctgaac
ctcaactcaccagagaatctctatcctaagttttcgtctccgtgggcgtcagctccctgc
cgaccgcaggatatcgacttccacgttccctcagagtatttaaccaacatccacatacgg
gataagttagcggctatcaagttgtctcggtatggagaggacctgctgttttatctttac
tacatgaatggaggagacctgctacaactgctggctgcagtagaactgtttaacagggac
tggaggtaccataaagaggagcgggtctggatcacccgagctcctggaatggagcccacg
ctgaagaccaacgcctacgagcgaggaacctactacttctttgattgtctcaactggagg
aaggtggccaaggagtttcatctggagtacgacaaactagaagagcgacctcatgttccc
tccaccttcaactacaatcctgcccagcaggccttctga
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