Oryzias latipes (Japanese medaka): 101171162
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Entry
101171162 CDS
T02443
Symbol
cntn1
Name
(RefSeq) contactin-1 isoform X1
KO
K06759
contactin 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
101171162 (cntn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ola04515
]
101171162 (cntn1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ola00537
]
101171162 (cntn1)
Cell adhesion molecules [BR:
ola04515
]
Immunoglobulin superfamily
Contactins
101171162 (cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ola00537
]
Others
101171162 (cntn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Ig_4
C2-set_2
Sp38
Motif
Other DBs
NCBI-GeneID:
101171162
NCBI-ProteinID:
XP_011474223
UniProt:
H2LDU8
LinkDB
All DBs
Position
6:complement(13082908..13156367)
Genome browser
AA seq
1029 aa
AA seq
DB search
MLRLALLLHLLLLSFTPAGASVHEEFADLCGDGSVGFGPVFEKQPVDTIYPEESLEANIT
MNCQAKANPPATYKWMLNDREIDIGAERNHYSLIEGNLVISNPVKSKHVGKYSCSATNMY
GTVISKEASVQFGYLDLFSTDERTTVYVKEGQGAVVLCAPPPHFPAKLSFRWIFNEFPTF
IQLDNRRYVCQTTGNLYISKVESSDRGNYSCIASSHSISKSVFSNYIPLQPLTERPNRKY
PADLRVKFPDTTALVGQNVTLECFALGNPVPEIHWRKMEGHLPQNHDLRMSGSQLHLYNI
QVKDSGIYKCEAINSKGKDYHSANVFVEAYPEWVEHITSKKKELHSNYTMSCKASGKPEP
KIRWLKNGHQIDEKDVHFRNLTLDNSGMYQCIAENRHGVIYANAELQVFACPPTFEHNPI
KTVMVAKNSRAVLECRPYAAPTPSFTWSKGTELLSNSTRVFIWEDGSLEIRDVTQSDEGQ
YTCFASNILGKASSVVSLSVTDSTRITLPPSDADVNAGEDAWMRCAASHDPSLDITFIWS
LDGRVIDLDKGRLHYERVPNGNSSDELKIKNAQVKHAGVYSCTAQTTADNVTASARLIVR
GPPGAPGGVRVINKTETTVTLQWSRGADNHKSISKYTIQYRDDFLKDAWSNARTSPADVE
GNAEMATVVNLFPWTEYEFRVIAANILGSGDPSKPSPKERTLDAVPVVAPSEVGGGGGTG
RELIITWTPVQPKYHYGPNFGYILAFKPQDQKEWKRMKVTDSESKRYIHKDPSMPPVTPF
DVKIKAFNSKGEGPFSIKAVVYSGQDAPSEAPAVIEGRALSASTAIISWKHVANVEGYKV
KFWTNQQDREGRAQEVAVSGMENHTRIEGLKPNSEYNIEVRGYNSAGYGPPSKHLKVQTK
KPPPDRPPKIIGTKVKGQFINIAWEAVEPLSNESKVDGYRVLFKPKGNQTSTLYTTNKRS
IDIPLLADKEFVVEIRAHTDGGVGAVSQIGFPDNNYPASGAASKGGGVTVNQSFCIFSLS
LALLFFLNL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcctcgccctgctcctccatctactgctcctctccttcactcctgcaggtgct
tcggttcatgaggagtttgcagatctctgtggagacggatctgtaggtttcggaccagtg
tttgagaagcagccagtggatacgatctaccctgaggagtcactggaggccaatattacc
atgaactgccaggctaaagctaatccacctgccacatacaaatggatgctaaatgacaga
gaaattgacatcggagcagaaagaaaccactacagtttaattgagggcaacttggttatc
agcaacccagttaaaagcaaacatgtaggcaaatactcctgttcggccaccaacatgtac
ggcactgtcatcagcaaagaagcgtccgtccagtttggctatttggatcttttctcaacg
gatgaaaggaccacagtttacgtcaaagagggtcagggtgcagtcgtgctctgtgctcct
ccaccacatttcccagccaagctgtccttcagatggatcttcaatgagttccctaccttc
atccaactggacaaccgccgctatgtctgccagacaacaggaaacctatacatctccaag
gtggagtcgtccgacagaggcaactactcctgcatcgcatcaagccactcgatttcgaag
agtgttttctccaactacatcccgctgcagcccctgactgaacgtcccaacaggaagtac
cccgctgacctccgagtgaagttcccagacaccactgctttagttggacagaacgtcacc
ctggagtgctttgctttggggaatcctgtacctgagattcactggagaaagatggaagga
catttaccacaaaatcatgacctgcggatgtcaggctctcagctgcatctgtacaatatc
caggtaaaagacagcgggatttacaaatgtgaagcaatcaactccaaaggaaaagactac
cactctgcaaatgtatttgttgaagcttatcctgaatgggtggagcacatcacgagcaaa
aagaaggaactccatagtaactataccatgtcatgtaaggccagtggcaaaccggaacct
aaaatccgttggctaaaaaatggtcatcagattgatgaaaaagacgtccactttaggaac
ttgacgttggataattctgggatgtaccagtgcatagcagagaatcgtcatggagttatt
tatgccaatgcagagctgcaggtgtttgcttgtcctcccacttttgagcacaatccaata
aagacagtgatggtggccaaaaacagtcgggctgtgcttgagtgtcgaccgtacgcagct
ccaacgcctagcttcacctggagcaaaggaactgagctgctctccaactcaaccagggtg
ttcatctgggaggatggaagcttagagatccgggatgtgacacagtcagacgaaggccag
tacacatgctttgccagcaatatcttgggcaaggctagcagcgtggtctcgctgtcggtt
acagactccacaaggatcaccttgccaccctctgatgctgacgttaatgccggggaggat
gcctggatgcggtgtgcagcatcacatgacccgtccctagacataaccttcatctggtcc
cttgacggacgagtcattgacttggacaagggcaggctgcattatgaacgggttccaaat
ggaaattcaagtgatgagctgaagatcaaaaacgctcaggtcaagcatgcaggagtttat
agctgtaccgcgcagaccacagctgacaacgtcactgcctctgcccgtttgattgtgagg
ggtccccctggagcccccggtggggttcgagtaataaacaagacggaaacgactgtgacg
ctgcagtggagccggggagcagacaaccacaaatcgatctccaaatacaccatccagtac
agggacgatttcttaaaggatgcttggagcaacgccaggacgtctcctgctgatgtggaa
ggaaatgcagaaatggccactgttgttaacttattcccctggacagagtatgagttcagg
gtcatcgctgccaatatccttgggtcaggagaccctagcaaaccatcacctaaagaaagg
acactggacgcagttcctgtggtggcgccgtcagaggtcggtgggggtggagggactggt
agggagctgatcatcacatggacgccagtgcagccaaagtaccactatggccccaacttt
ggctacattttagccttcaaaccgcaagaccaaaaagaatggaaaaggatgaaagtaact
gattctgaaagcaagcggtacatccacaaagaccccagcatgcctccagtgacaccattc
gacgtcaaaatcaaagctttcaacagcaaaggagagggaccctttagcataaaagctgtg
gtttactctggacaggatgctccatctgaggctcctgctgtgattgaaggcagagcgttg
tctgcctcaacagctataatatcctggaagcatgttgctaatgtagaaggttataaggta
aagttctggacaaatcagcaggacagagaaggaagagcacaagaagtcgctgtgtcaggc
atggagaaccacaccagaattgagggtttaaaaccaaactctgagtacaacattgaggtt
cgaggctacaactctgcaggatacgggcctcccagtaaacacctgaaagtccaaaccaag
aaaccccctccagatcgacctccaaaaataataggtacaaaggtgaagggtcaattcata
aatattgcctgggaagccgtggaaccgctatcaaatgagtcaaaagtagacggttacaga
gtgctgttcaaaccgaaaggtaaccagaccagcactctgtacacaaccaacaagcgctcc
atagacatccccctccttgctgataaggagtttgtggtggagattcgggcgcacacagat
ggaggagttggagccgtgtcacaaatcggcttcccagataacaattatccagcttcaggt
gctgcttctaagggtggaggtgtcacggttaatcagtccttctgcattttctccctgtct
ctggcgctcctcttcttcctgaatctctga
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