Oryzias latipes (Japanese medaka): 101171258
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Entry
101171258 CDS
T02443
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03015
mRNA surveillance pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101171258 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
101171258 (ncbp1)
03015 mRNA surveillance pathway
101171258 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101171258 (ncbp1)
03041 Spliceosome [BR:
ola03041
]
101171258 (ncbp1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
101171258 (ncbp1)
Spliceosome [BR:
ola03041
]
Common components
Common spliceosomal components
Cap binding complex
101171258 (ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Vfa1
AAA_11
PHM7_cyt
DUF1690
AAA_13
DUF1664
MG280
tRNA_bind_2
Exonuc_VII_L
Importin_rep_6
FapA
DUF7197
Motif
Other DBs
NCBI-GeneID:
101171258
NCBI-ProteinID:
XP_004073649
UniProt:
A0A3B3H462
LinkDB
All DBs
Position
10:27752244..27762777
Genome browser
AA seq
799 aa
AA seq
DB search
MSRRRHSDDSDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNF
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFISVTQEEDVPQVRLDWFVYVVLSCLPWV
GKELYEKKDVEMDRLLSQIEGYLKRRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKTHWRERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPSPPHIDVMYTSLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTSCMDRFINWFAHH
LSNFQFRWSWDDWADCLTVDLDKPKPKFVKEVLEKSMRLSYHQRIVDIVPATFSALIPAD
PIFTFKYEDETASSLPGYPTSVTVSNAIKNRASNEEILAILKEVPNPNQEDDDDEGEAFN
PLKIDVFLQTLLHLAAKSFSHSFSALGKFHEILKTLTESDEGKLHILKVVYDVWRNHPQM
IAVLVDKMVRTQIVDCAAVANWLFSQDMAHEFTRLFIWEILHSTIRKMNKHVQKIQKELE
EAKEKLEKQQNKRVTSQRDSGDDEDMEKNSEDEEGQLEEQIERLQEKVESAQSEQKNLFL
VIFQRFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQVFLMHHVTIQQYMGTLENLLFT
AELDHHILAVYQQFCALQL
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggagacacagcgacgacagtgacggaggtcaagcccacaaaaggaggaga
acatcagagcctattgagattgaagaccgcctggagtcgctgatatgtcgcgttggagaa
aaaagtacatcgtccctcgagagcaacctggaggggctcgcaggggttttggaggcggac
cttccaaactacaaaaacaaaatcctgcgtattttatgtgcagtagcccgcctcctgccg
gagaagctgacagtctacacgacgttagtcggcctcctgaacgccaggaactacaacttt
gggggagagtttgtggaggccatgatccggcagctgaaggagacgctgaaaaacaacttc
tacaacgaagccgtttacttggtgcgctttctgtcagacttggtcaactgtcacgtgatc
gctgccccttccatggtagccatgtttgaaaacttcatcagtgttactcaggaagaagat
gtgccacaggttcggttggactggttcgtgtacgtggttctgtcctgcctgccgtgggtc
ggcaaggaactttatgagaagaaggacgtggagatggaccgactcctgagccagatcgaa
ggctacctcaagaggagggtgaagactcacgtccccatgctgcaggtgtggaccgctgag
aaaccacatccacaggaagagtacctggactgcctttgggctcagatccagaaactgaag
aaagaccgctggcaggagcgccacatcctccgaccgtacatcgccttcgacagcgtcctg
tgcgaggccctgcagcacaacctgccccccttcactccgccgggacacatgcctgacgcc
cagtaccccatgccccgcgtcatcttccggatgttcgattacaccgacgccccggaggga
cccgtcatgcccggcagccattctgtggagagatttgttattgaagaaaacctccactgc
atcatcaaaactcactggagggaaaggaaaacatgtgctgctcagttactcagctatcca
ggaaagaataaaatcccgctcaactatcacatcgtagaggtgatctttggcgagctcttc
cagctgccctccccgccgcacatcgacgtcatgtacacctctctgctcatcgagctctgc
aaattacagccggggtcgctaccgcaagtcttggcgcaagccacagaaatgctttacatg
aggctggacaccatgaacaccagctgcatggacagatttatcaactggtttgctcatcac
ttgagtaactttcagttccggtggagttgggacgactgggccgactgcttgactgtggac
ctggacaaacccaagcccaagtttgtcaaagaggttctggagaagtcgatgaggctttcc
taccatcagaggattgtggacatcgttcctgccaccttctccgccctcattcccgccgat
cccatctttacctttaaatacgaagacgagaccgcctcttcgttaccgggttaccccacc
tcagtcaccgtttcaaacgccatcaagaaccgagcgtccaacgaggaaatcctggccatc
ctcaaagaggtccccaaccccaaccaggaggacgatgacgatgaaggcgaggccttcaac
cccctgaagatcgacgtgttcttgcagacgctgctccacctggcggccaaatccttcagc
cactcctttagcgccctcggaaagttccacgagatcctgaaaacgctgacggagagcgac
gaggggaagctgcacatcctcaaagtggtgtacgacgtgtggcggaaccacccgcagatg
atcgccgtgctggtggacaagatggtccggacgcagatcgtggactgcgcggcggtggcc
aactggctgttctctcaggacatggctcacgagttcaccaggctcttcatctgggagatc
ctgcactccaccatccggaaaatgaacaaacacgtgcagaagatccagaaggagctggag
gaggccaaggagaagctggagaagcagcagaacaagagggtgacctcacagagggacagc
ggcgacgacgaggacatggagaagaacagcgaggacgaggagggtcagctggaggagcag
atcgagcggctgcaggagaaggtggagtcggctcagagcgagcagaagaacctcttcctc
gtcatcttccagcgtttcatcatgctgctgacggagcacctggtccgctgcgagacgggc
agcgtggacatcagcacgccgtggtacaagaactgcatcgagcggctgcagcaggtcttc
ctcatgcaccacgtgaccatccagcagtacatgggaaccctggagaacctgctgttcacc
gccgagctggaccaccacatcctggccgtgtaccagcagttctgcgccctgcagctctga
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integrated database retrieval system
