Oryzias latipes (Japanese medaka): 101171387
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Entry
101171387 CDS
T02443
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03410
Base excision repair
ola03420
Nucleotide excision repair
ola03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101171387 (rfc1)
03410 Base excision repair
101171387 (rfc1)
03420 Nucleotide excision repair
101171387 (rfc1)
03430 Mismatch repair
101171387 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101171387 (rfc1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101171387 (rfc1)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
101171387 (rfc1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
101171387 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
RuvB_N
Rad17
AAA_33
AAA_5
AAA_17
BRCT_2
AAA_14
nSTAND3
AAA_7
AAA_18
AAA_16
RNA_helicase
AAA_19
NPHP3_N
NTPase_1
Motif
Other DBs
NCBI-GeneID:
101171387
NCBI-ProteinID:
XP_004065892
UniProt:
A0A3B3IKW4
LinkDB
All DBs
Position
1:complement(13016696..13026495)
Genome browser
AA seq
1152 aa
AA seq
DB search
MDIRRFFGPTSGKPAVQKPAPNTKAEEKKNLNSSDVKRTKVKSSKTEERRKDSEKKRKKY
SVIASDSEEEEKPATKSKKSSKSTSSKAEPLPKKDPVQYVSETDSDSDNFQSLKKGAKPK
QNGSPKSNKADAERSRSGSKASPVTGKSGLKSPTTPKSVAPPPPKLTPTSVADYFGGAAI
HRSEKKLVASAKRKAPTQDFEDLISDEEIARQLQVEEEMELEKQVHEDEEFARTLALMDS
EPQAKKARKNADEKQSTTPKKSVGDAAAEASSVTKVRRSTSENVISPSPRKVQAPVKTSS
KLSTMKRKEEEKSAGPRSKTANSPSKMKFSPKKELLGSSSTGEKFTPKAGTTPTALKTSP
KKPESTSTSPDDSEKKKAHTLAFKNFLNRDGPRALGSKEIPKGAENCLEGCMFVLTGVLE
SMEREDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESLGTQILDEDGLLELI
RTKPGKKSVYEIAAEAECKATKTKTPPSQASKNTPKTQKISPSKGNSRSPHTPSPSKTGR
AQRSSEGSTPPGRGAAHTARRELGLSPSTSSSAPKVASSSGTAEGPSLLWVDKYRPQSLK
AVIGQQGEQSCANKLLRWLQNWYKNHSGGAGKPAAAKFSKFGKDDGSTYKAALLSGPPGV
GKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVSESLNNTSIEDFYKGTSQTVSSRHV
LIMDEVDGMAGNEDRGGMQELIGLIRTSKIPIICMCNDRNHPKIRSLSNYCFDLRFQRPR
VEQIKGAMMSIAYKEGVKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSD
AARARKDMKLGPFDVCRKVFTRGEETDHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAA
AGGDMKSHLVLLSKTADSISDGDLVDRKIRSGQNWSLLPTQAIYASVLPGELMRGYMTHF
PVFPSWLGKNSSTSKHSRIMQELSSHMSLKTMGSRQALNLDYLPFLRLALLAPLQRLGAE
GAGQAVKLLDDYQLVKDDVDSIMEVSVWGGRPDPFSKLDSKVKAAFTRAYNKEVHLTPYS
LQTVKKGRRGGGETDLGGEEMDQDGQESEDEGLKTDAMIKQKKTKTTKESKTQKEDSGKG
KGKGKGKGKAKK
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggatataaggcggttctttggaccgacatcagggaaacctgcggtgcagaaaccagcg
ccaaacaccaaagcagaggagaagaagaacctcaactcctctgatgtgaaaagaaccaag
gtcaaaagctccaaaacagaggagcgacgcaaagacagtgagaaaaagcgcaagaagtat
tctgtcatagcatcagattcagaagaagaggagaaacctgcaacaaagtctaagaaatct
tctaaatcgacgagcagcaaagcagagcctcttcctaaaaaagacccagtgcagtacgtc
tctgaaacagactcggacagcgacaactttcagtcgctgaagaaaggagccaaacccaaa
cagaacggttctcctaaaagcaataaggcggacgcagaacgttctcgctcaggatccaaa
gcctctcctgtcacaggaaaatctgggctaaagagtcccacaacccccaagtctgttgca
ccacctccacccaaactaactcctacctcagtggcggattatttcggcggtgctgctatt
catcgctcagaaaagaagctggtagccagcgccaagagaaaagctccaacacaagacttt
gaggatctgataagtgatgaggaaatcgcccgacagttgcaggtggaagaagagatggag
ctggaaaaacaagtccatgaggatgaggagtttgccaggacgctcgccttgatggactcg
gagccgcaggccaagaaggctcgtaaaaacgcggatgaaaaacaaagcacaactcccaaa
aagagtgttggcgatgctgctgcagaggcgagcagcgtgacgaaggtcaggcgcagcacc
tctgaaaacgtgatcagtccatcgcccaggaaggtacaagccccagtcaaaaccagctct
aaactatccacgatgaagagaaaggaggaggaaaagagtgcaggaccgaggagcaaaaca
gccaactccccctctaaaatgaaattctcacctaagaaggagctgcttggctcttcaagc
acaggcgagaagttcacacctaaagctggaaccacgcccacagcacttaagacgtctccc
aagaaaccagagagcaccagtacaagtcctgatgactccgagaagaagaaagcccacact
ttggcgttcaagaatttcctcaacagagacggacctcgcgctctggggtcaaaggaaatc
ccaaagggggcagaaaactgtctggagggctgcatgttcgtcctgacaggagtcctggag
tccatggaaagagaagatgccaaatctcttattgagcgctatggaggcaaggtgacgggc
aacgtcagcaagaaaaccacgtacctggtgcagggcagggacagcggagtgtccaagctg
gagaaggcggagagtttaggcacccagattctggatgaggatggtctgctggagctgatc
agaaccaaaccaggaaagaagtctgtgtacgagattgcagcagaagcagagtgcaaagcc
acaaagaccaagaccccccctagccaggcctcaaagaacacccccaaaactcagaagatc
tccccctctaaaggtaactccaggtctcctcacaccccaagcccatcaaagacgggtcgg
gctcagaggagcagtgaaggcagcacccccccaggcagaggcgccgctcacacagcccgc
agggagctcggcctctccccctccacctcctcttcagctccaaaagtggcgtcgtcatca
gggacagcggaggggcctagccttctgtgggtggacaagtaccggccacagtctttgaag
gctgtgattggccagcagggggagcagagctgtgccaacaagctgctccgctggctccag
aactggtacaaaaaccacagcggtggagctggaaaaccagcagctgcaaagttcagtaaa
tttggcaaagatgacggctcaacatacaaagctgctctgctctctggtcctccgggggtg
ggcaagaccaccacagctgccctggtctgcgaggagttgggcttcagctacgtggagatg
aacgccagctgcacccgcagcaaaaacagcctgaaggaggtcgtgtccgagtcactcaac
aacaccagcatcgaggacttctacaagggaacctctcagacagtgagcagcagacacgtc
ctcatcatggatgaggttgacggcatggccggtaacgaagaccgcggaggaatgcaggag
ttaatcggcctgataaggacttcaaagattcccatcatctgcatgtgcaacgaccggaat
caccctaagatcaggtcactgtccaactactgctttgatctgcgattccagaggccgcga
gtggagcagatcaagggcgccatgatgtcgatcgcttacaaggagggggtgaagatcccg
cccccggctctgaatgaaatcattttggcctccaatcaggatgtccgacaggtgattcat
aacctgagcatgtggtcagccaaagacaaagtcatgacatatgaccagtgcaagtccgac
gcagccagggcccgcaaggacatgaagctggggcccttcgatgtctgcaggaaggttttc
acccgtggagaagaaacggatcacatgagcctcatcgacaagtctgatctctttttccac
gactactcgctggcgccgctttttgttcaggagaactacgtgaacgtccgtcccgctgca
gctggtggcgacatgaagtctcacctggtgctgctcagcaagacggcagactccatctct
gatggggatctggtggacaggaagatccgctcggggcaaaactggtcactactgccgaca
caggccatctacgccagtgtgttaccaggcgagctaatgaggggctacatgactcacttc
ccggtctttcctagctggctcggcaaaaactcctccaccagcaaacattctcgcatcatg
caggagctcagctctcacatgagtttaaaaacgatgggcagcaggcaggcattgaacctg
gactatctgcccttcctgcgcctggcgctgttggctccacttcagaggctcggagccgag
ggagccggtcaagccgtgaagcttctggatgactaccagctggtgaaggacgacgtggac
agcatcatggaggtcagcgtctggggaggaagacctgaccccttctccaagctggactca
aaggtgaaggcagctttcacgcgggcgtacaacaaggaggttcacctgacgccgtactct
ctgcaaactgtgaagaagggtcggcgtggcggcggggaaacggatttggggggagaagaa
atggatcaagacggtcaagagtcggaagacgaagggctcaagaccgatgccatgatcaaa
cagaagaagaccaaaaccactaaagagtccaaaacccagaaggaagattctggaaaaggc
aaaggcaagggcaaaggaaaaggaaaggctaagaaatga
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integrated database retrieval system
