Oryzias latipes (Japanese medaka): 101171475
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Entry
101171475 CDS
T02443
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04512
ECM-receptor interaction
ola04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101171475 (frem1)
04518 Integrin signaling
101171475 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ola04091
]
101171475 (frem1)
Lectins [BR:
ola04091
]
C-Type lectins
Lecticans
101171475 (frem1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
101171475
NCBI-ProteinID:
XP_023821982
LinkDB
All DBs
Position
18:30001724..30033538
Genome browser
AA seq
2173 aa
AA seq
DB search
MASAGQTLALMLLAVLLLGLTCSCHGSLVKVNKGLKVMRGQTAYLKEGDLQFHIPTEENP
CKVEVVLTEPITQRVGKLLPQVFDCRFLTDEVKYVHNGCPLLREDTVKLRLYRFTETETY
MEVFSLLVEITDPECSIIKLGPKSLEVPEFYGLSDPLDGNVVSFHYESRSNLECSVHISI
HDIPLPAHGRLVTGEPEKATTRGDEPESFVHLRQQLDNKARATCKSESCLKGLKLVKFTK
VSCHDFLEMGLKYQHMDPPSPDVDYIVIRLDLKDIRSGSIYKSEQAWIPVRVVGAMPNQP
PKPSFTSMYILEVDQFILTPLSTATVDAEDEETPQQLLVFNVTKAPEQGFLTHLSDHTRA
VSSFTWLDLNDMLVGYQPPNASHAQRRNYEVEVEVYDFYFEKSQSMTIHVSVRNADTNAP
RVSWNMGLSLLEGQSRPIIWDQLQIVDNDDLNAVRIITVDGLQHGRLTVRGGKSFVFSVS
DIKSGVVHYHHDDSDSIKDFIIFRITDGHHQTQHKFPIKILPKDDSPPFLISNMLLKVTE
GQTALVRGATLQASDMDSSDDYILFNITHLPQAGEVMKMPGAGQAGYAVRHFLQKDLSQS
MIYYRHFGNEVFDDSFEVVLSDFHDPPNLSEPQVVMVHIEPVPDQPPKEVPGSSRCLVVK
ESDVVRITQQHLHFADLESPERELTYTVTTPPFYTGPHNSPDAGRLFLVDSIPRFTKDPN
APALRLFTQHAVNFMKVAYMPPITDIGPYPQHIQFILSITNHLGQTVTGICFNITVMPVD
NQPPQVITGLLTIDEGGRRRLGPEHLLLSDVDSAEERLQVQLQGEPGHGVLQLNNRPLMS
NQTFTLQELKSFQVSYTHDGSETTEDTIPFIASDGTNSVTFTLQVKVTPINDEIPVMVAG
LKPVLQCAEGEEITITAEYIYATDPDSNSSSLAVLIARQPNHGVVLRNGVVVDRFIQADI
TAGIISYRHTGLEIGLTPRDDTITFVISDEETESSAFCCSGLNAIKSGTRLRDSLPLYDL
HVTVFPVDNQPPSLATGAIFMVDEGGAGSISTLHLKASDLDTVEDKLTISLISPPQFGYI
ENVLPSPGFEKSNTGISIASFSYKDVIEGHINYVQSKHQRTEPTADQFMLLVSDGTRSSA
NVPFHVIINPTNDEIPEIVASNITVPEGGMKQVVLHATDMDVPKNLLLFTVVTPPQHGRI
ICQKDGTISKRHEDNASPVVDFTMEDLQHGMDVMYAHDDSEDVEDSFSIRLTDGKHQVDR
RLRVEVLPVNDQVPRIIRNNGLEVEPGEARVISSVTLLAQDGDTPSSEVQFILESVPKQG
LLQLKEKERWETLTAGRNCTQESVDMNLLRYVHIGPHAAKTQDLFVFHLEDGKNQSPPQH
FHISVKELKKGHIAIFVRPATLSRGDRLVLTTDVLLATDDSDKPEELLFVITEPPAHGHL
EYVTHPGRSISTFSQMDVAANLVAYVHDNRASRTTETFQFTVSNGKSSQSGSFQLQLEMV
DRVLPALTNNRGLRIPRGSAMILGPDSLCMSDPDTPPVNLTFVLKQLPKYGHLLRSGKAL
GAGSNFTQADINQLELVYAHDGGPSQIDRLAFTASDSTDRGFLLDGQLQTEPVFFTVQIT
SLDDSPPEVVRLLPLWKAEMLADGRHGIFVSSRELKAQDVDSRDEEVVFSIIRQPYFGYL
ENTTTGAFVSRRFSQTDLNRRRIVYIISPNAESLSDSLEFRVSDLLGNMGPSHILKFTWS
SVEFSQPDFSACEQQGTLTVDIVRRGNLAESSFVSITVGVASTVHEETAAAGKDFLPSPS
SLLQFDPGVARRAWLMEIIQDHLEEADETFELLLVSPEATVIGRIQKAQITIRDSGKDAC
RLNQDSPLFGGEEVKSDKYPEHGSIQLEKLPLGSEPAVWTRGDSISRTETLLQKKRLRVV
GRPKSIGPSSVFHNGTDVIYTYHGMVQMQVEDESSPSRGGRKAHVQVVSRGGRQRTSDVP
NEEKSDSTRLIPKAGSPSEHVRRESSVPKPCAPELAGLLHYNHTAAQLFQCSGVSWRPWT
PTHQTCPKGWSFHGDRCYLLSTKQKVTWSAANRACREKYQGTLASVLSKADMDFLWNFSG
RKPFWIGLNDLEGRGRWEWVAGDPVSFTNWKKMPPRSKGKASKRCVLVQRRAKWQIRECR
SGRGHRFVCSITP
NT seq
6522 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagccggtcagacgctggccttgatgttgcttgcagtgcttctgctcggatta
acctgctcgtgtcatggttccctcgtgaaagtcaacaagggtttgaaggtgatgcgaggt
caaacagcttacctcaaggagggggacctgcagttccacattcccactgaggagaatcca
tgcaaggtggaagtagtgctgactgagcccataacccaaagggtgggaaaactcctgcct
caggtctttgattgccgttttctgaccgatgaggtgaagtatgtccacaatggctgtcca
ttgttacgggaggacacagtcaaacttcgtctgtacaggttcacagagacggagacatac
atggaggttttttctctccttgtggagataacagatcctgagtgcagcataataaaacta
gggcccaaatccctggaggtccctgagttctatggcctctctgatcccctcgatgggaat
gtggtgtccttccactatgagagcagatctaacctggagtgtagcgtccacatcagcatc
catgacatccccctgccggcccacggccgactcgtcacaggagagccagagaaagccacg
acaagaggggacgagccggagagcttcgttcacctccgccagcagctggataataaagct
cgagccacttgtaaatctgaaagctgtctgaagggtctgaagctggtaaagttcaccaaa
gtttcctgccatgacttcctggagatgggactgaagtatcagcacatggaccccccgtct
ccagatgtggactatattgtaatcagactggacctgaaggacatcaggagcggcagcatc
tataagtctgagcaggcatggatccctgtgcgggttgttggtgcgatgcccaaccagcct
cccaaaccatcgttcacgtccatgtacatcctggaagtagaccagtttatcctcacgccg
ctctccacagccacagtggacgccgaagatgaggagactcctcaacagcttttagtcttc
aacgtcaccaaagcccccgagcagggcttcctcacccatctgtcggaccacacccgtgca
gtttcctccttcacctggctcgatctcaatgacatgctagtggggtatcagccccccaat
gcctcacatgctcagcgtaggaattacgaggtagaagttgaagtctatgatttttacttt
gagaaaagccagtcgatgaccattcacgtctctgtgaggaacgcagacacaaacgcaccc
agagtttcctggaacatgggcctgagtctgttggagggtcagtctcgtccaataatttgg
gatcagctgcagatcgtggacaacgacgatctgaacgctgttcgaatcatcacagtggac
ggtttgcaacacggacggctgactgtaagaggtggaaagagcttcgtgttctctgtcagt
gacatcaaatctggagttgttcactatcaccacgacgacagcgactccattaaggacttc
atcatcttccgcatcactgacggccatcatcagacccaacacaagttccccatcaagatt
ctccccaaagacgacagcccccctttcctcatctccaacatgctgctgaaggtcactgag
ggccagacggccctcgtcaggggggccaccctccaggcttcagacatggactccagtgac
gactacatcctctttaacatcacccacctccctcaggcaggagaggtcatgaaaatgcca
ggagcggggcaggcaggttatgcagtcagacacttcctccagaaggacctgtctcagtcc
atgatttactacagacactttgggaacgaggtgtttgacgattcttttgaggtggtgctg
tcggatttccatgaccctcccaacttgtcagagcctcaggtggtgatggtccacatcgaa
cctgttcccgaccagccacccaaggaggttcctggatctagtcgctgtcttgtggtaaaa
gaatccgacgtggtccggatcacacaacagcaccttcactttgcagacctggagtcccca
gagcgggagctgacatacacggtcactactcccccgttctacaccggcccccacaacagt
ccagatgcagggaggttgttcctggttgacagcatacccaggttcaccaaagatcccaac
gcaccagccctgaggcttttcactcagcatgcagtgaacttcatgaaagtcgcctacatg
cctccaatcacagacattgggccttatcctcagcatatccagtttattctgtccatcacc
aaccatttgggtcaaacagttacggggatctgtttcaacatcacagtgatgccagttgac
aaccagccaccgcaggttatcacgggcctgctgaccatagatgagggcggacggcgccgg
ctgggcccggagcacttgctgctgtcagatgtggactcagctgaagaacggctgcaggtg
cagctacagggggaaccaggacacggagttttgcagctcaacaaccgtccactcatgtcc
aaccagactttcaccctacaggaactgaaaagctttcaagttagttacacccacgatggc
tctgaaactacagaagacactattccatttattgcatcagacggcaccaattcagtcacc
tttactctgcaagtgaaggtgacgcccatcaacgatgagatccctgtgatggtcgctggc
ttgaaaccagtccttcaatgtgcagaaggagaggaaataaccatcacagcagagtacatt
tatgccactgatcctgacagcaacagcagcagcctggcagttttgattgctcggcagccg
aatcacggtgtggtgctgcggaatggggtggtggtcgatcgcttcatccaagcagacatc
acggcagggatcatatcatacagacacacgggactggagattgggctgacgccacgtgac
gacaccatcacctttgtcatttctgacgaggagacagagagctctgctttctgctgcagc
ggcctgaatgccatcaagagcgggactcggctgagggacagcctgcccctctatgacctc
catgtcacagtgtttcctgttgacaaccaacctccttccttggcaacaggggccattttc
atggtcgatgagggtggagctggctctatttctactttacatttaaaggcctctgacttg
gacacggtggaagacaagctgacgatcagtctcatttcccctccccagtttgggtacata
gaaaatgtcctccccagccctggctttgaaaaaagcaacacaggcataagtatagcatct
ttttcatacaaagatgtcatcgagggtcacatcaattatgttcagtccaaacaccagagg
acggagcccacggctgaccagttcatgctcttggtgtcagatgggacacgcagctctgcc
aacgtccccttccatgttataattaacccgacaaacgacgagatcccagaaatcgtggcc
tccaacatcacagtaccagagggaggaatgaagcaggtggtgctgcatgctacagatatg
gatgtccccaagaatctcctgctttttacggtggttacaccacctcaacatggcaggatc
atctgtcagaaggatggaacgatcagcaaaagacatgaagacaatgcatcccctgttgtg
gactttactatggaagatctccaacacggcatggacgtgatgtacgcacacgatgactcc
gaggacgtggaggacagcttttccatccggctgactgacggcaaacaccaggtagacaga
cggctgagggttgaagtgctgccagtgaacgaccaagtgcctcgaatcatcaggaacaat
gggctggaggtggagccaggagaggccagggtcatttccagcgtgacgttgttggcgcag
gacggagacaccccctcctctgaggtccagttcatattggagagcgttcccaagcaggga
ctgcttcagctcaaggaaaaggagcggtgggaaacgctgaccgccggcaggaactgcacc
caggagtcggtggacatgaacctcctgcgctacgttcacatcgggccccacgctgccaaa
acacaggatctctttgttttccaccttgaagatgggaaaaaccagtcccccccacagcac
ttccacatctctgtcaaagagctgaagaaaggacacattgccatctttgtgaggccggcg
accttgagccgaggcgatcgcctggtcctcaccacagatgtgctgttagccaccgacgac
tccgacaagccggaggagcttctgttcgtcatcacagagccgccggctcacggacacctg
gagtacgtcacacatcctggacggagcatctccaccttcagccagatggacgtagcagca
aacctggtggcctacgtccacgataaccgagccagcaggacgacggagaccttccagttt
acggtcagcaacggtaaaagcagccaaagtggaagcttccagctccagttggaaatggtg
gaccgggtcctgccggctctgaccaacaacagaggcctcagaatccctcggggttctgcc
atgatcctgggccctgacagcctctgcatgtccgaccccgacactccgcccgtcaacctg
acctttgtcctcaaacagcttccaaagtacggtcaccttctccggtcgggtaaagccctg
ggcgccggctcaaacttcacccaggccgacatcaaccagttggagctggtctacgcacac
gatgggggtccgtcacagatcgaccggttggccttcacggcctcggacagcaccgacaga
ggcttcctgctggacgggcagctgcagacagaaccggttttcttcacagttcagatcaca
tctttggatgattcccctcctgaagttgtcaggctcctccctctgtggaaggcagaaatg
ttggcggatggccgacacgggatctttgtgtcgtctcgggagctgaaggctcaggatgtc
gacagcagagacgaggaggtggtgttttccatcattcgtcagccctactttggttacctg
gaaaacaccactacaggggcgttcgtgtcccggcgcttctcccaaacagatctgaataga
agacggatcgtctacatcatcagtcccaacgccgagtctctctcagacagcctggagttc
agagtgtctgatcttctgggcaacatgggcccctcccacatactgaagttcacgtggtcc
agcgtagaattttcccagccagacttttctgcctgcgagcagcagggaactttgaccgtg
gacatcgtccgaagggggaacctggcagagtcgtccttcgtcagcatcacggttggtgtg
gcttccacggttcatgaagaaacagcagcagctggaaaagatttcctcccaagcccgtca
tctctccttcagtttgatcctggcgtggcgaggcgggcgtggctcatggagatcatccag
gaccacctggaggaggctgatgagacctttgagctgctgctggtctctcctgaggccacc
gtgattggaagaatccaaaaggctcagatcaccatcagagactctgggaaagacgcctgc
cgcctgaaccaggattctcctctttttggaggagaagaagtcaaatcagacaagtatcct
gagcacggctccatccagctggagaagcttcctctgggttcagaacctgcggtttggacc
cgaggagacagcatctcaaggacggaaactcttctccagaaaaagaggctccgcgttgtg
ggccgtcccaaatctattggcccttcttcagtgtttcacaacgggacggatgtcatttac
acatatcatgggatggtgcagatgcaagtggaagatgagagctctccatcccgggggggc
aggaaggctcacgttcaggtggttagcaggggggggcggcagaggacgtcagatgttccg
aatgaggaaaagtctgactcaacacgactcatccccaaagcaggaagcccttcagaacat
gtgagacgggaaagctctgtccccaagccgtgtgcgccggagctggcggggctcctgcac
tacaaccacaccgccgctcagctgtttcagtgcagcggcgtgtcctggaggccgtggacg
ccgacgcatcagacgtgccccaaggggtggagcttccacggcgaccgctgctaccttctc
agtaccaagcagaaggtcacatggagcgcggcgaacagggcgtgcagagaaaaatatcag
ggaactctggcaagtgttctctccaaagctgacatggactttctgtggaacttcagtggc
aggaaaccgttttggatcggtctgaatgacctggagggcagaggacgctgggagtgggtg
gctggtgacccggtcagcttcaccaactggaaaaagatgccccctcggtccaaagggaag
gcgagtaaaaggtgcgtcttggtccagagaagggcaaagtggcaaattagggagtgcagg
agcggcagaggacaccgcttcgtttgctcaatcacgccctga
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integrated database retrieval system
