Oryzias latipes (Japanese medaka): 101171503
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Entry
101171503 CDS
T02443
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ola00535
]
101171503
Proteoglycans [BR:
ola00535
]
Extracellular matrix (ECM) proteoglycans
Others
101171503
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
VWA_3
DUF4992
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101171503
NCBI-ProteinID:
XP_011478960
UniProt:
H2L5M0
LinkDB
All DBs
Position
11:2206304..2321060
Genome browser
AA seq
1869 aa
AA seq
DB search
MQSSVTPSLCLLGCILIALLPNSAQGQVSSPRRFRARILSPTKLDVAWKEPKGEFEGFKV
SYIMNPGGRQKMVELSKQKTNLLIEDFDSTKEYVFKITAVGGGRESKPLHGKLKAQRSTL
ESTQSQRGQSGSAIQENNEISEDMEGFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVRAFSVDFDKTRIGLAQYSGDPRIEWHLNTHSSKEAVIEAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLKDAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKGVCDRVDQLDKQIKGGGESAPPPDSLAPPR
DLVIADITARSFRVTWTHATGQVEKYRVVYYPASGGQPEEKVVQGTDNSVELNYLNSLTE
YQVAVFAIYRSSASQALRGSATTLALPTVNNLELHDITHSTMRVRWRAAIGATGYMILYA
PLTEGESADEKEVKVADSVNEVELEGLSPDTEYTVTVYAMYGEEASDPMTSQETTLPLIP
ARNLRFSEVDHSSARLTWESTSRLVRGYRVMYVKTNGVQTTEVDVGKVTTYLLKNLTSLT
EYTVGVFAIYDEGEAEAVTESFTTKVVPDPLDLRSSDITAESFRVSWQHPATDVTLYRIT
WTPTDGGDSKDVLVDSNVNTYKITGLSPDSEYEVLLAAIYANEIESDEVILVENTAKRTT
TVATTSSKPSPRHGVRNMKIDDETTFSLRVSWQPVDSRNVRQYRLSYISMRGDRATETRT
VPPAQNSIVLQPLLSDTEYKITLIPVYPDGDGPVASQVGRTLPLSAPKNLRVSEEWYNRF
RISWDVPPSPTMGYRVVYQPLSAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYTT
GSSEALSGRAKTLYLGVTNLSTYQVRMTSVCAQWLTHRHASAYRVVIQPLLGSQKQEIRL
GAGSNLHCFSNLKPNTEYKISVYAQLQDGTEGPAATATVKTLPVPTQAPTKPPATTPLPT
IPSAKEVCRAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTVGALDRIGPDGTQVAIAQFS
DDARTEFKLNSYTNKERLLDAVNKISYKGGNTKTGRAIQHVKENIFTAEGGVRRGIPNVL
VVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDAF
QKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVEDRYNSIYGVSMVPGTFNA
FPSFHLHSNALLAQPTRFIHPEGLPSDYTVSLLFRLLHDTPEEPFALWEILNNNNEPLAG
VILDNGGKTLTFFNNDYKGDFQTVTFEGPEIKKLFFGSFHKLHVAISKTSAKVFVDCKMV
SERAINAAGNITTDGLEVLGRMVRSRGNKDNSAPFQLQNFDIVCSTSWASRDKCCELPGL
RKEAECPALPKACTCTQDSKGPPGPPGVPGGPGIRGARGDRGEPGPVGPAGAVGDMGVPG
PQGPPGPQGPSGRSIIGPPGSPGERGQKGDPGQQGQQGIPGRPGAPGREGPPGPRGLVGK
DGPQGRQGPPGSMGTPGAPGSPGSTGPPGKQGELGPPGSPGSRGEKGDRGDVQSTASVQA
IARQVCEQLIQSHMARYNTLLTQVPSPPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPG
FPGQNGQNGNPGERGQPGEKGEKGSQGVGVQGPRGPPGPPGAAGQGRPGSQGQSGRPGNP
GAPGRPGVPGPVGPPGPQGYCDQNSCVGYNVGEGEDVTDRGAVSAVQLPPNVFQNYGEVE
EDDPYRYYQPNYPAPQPVSPEDPSLAYGDIELRSPGVHRSSRSVGSEGEKVGPKRRRKSR
AKELPGLTN
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctcagtcacaccgagcctctgcttgctgggctgtattctcatcgctctgctc
cccaactcggcacaaggtcaagtttcatcaccaagaagatttcgagcgagaatcttgagt
cctaccaagctggatgtggcctggaaggaaccgaaaggagaatttgaaggcttcaaggtc
agctacatcatgaacccaggtggacgtcaaaagatggttgaactttcaaagcagaaaacc
aatctgcttattgaagactttgattccactaaggagtacgtcttcaaaatcacagcggtg
ggaggaggacgggaaagcaaacctctgcacggcaaactcaaagctcagcgctcaacgctt
gaatccactcagtcccaacgaggacagagcggctccgccattcaggagaacaatgagatc
tcagaagacatggaggggtttatgtgcaagactcccgccatagccgacattgtgattctg
gtggacggctcctggagtatcgggcggatcaacttcaggttggtccggactttcctggaa
aacctggtcagagctttctctgtggactttgacaagacgaggataggtctggctcagtac
agtggagaccccagaatcgagtggcacttgaacactcactcctccaaggaagctgtgata
gaggcagtgaaaaacctgccgtataaaggaggaaacacgctgacaggtctggctctgacc
ttcatcctggaaaacagtttcaagccagagtctgggtccaggcctggtgttcccaagata
ggaatactgatcacggatggaaagtcccaggatgatgtgattcctccagcgcagagcctg
aaggatgctgggatagaactttttgccattggtgtgaaaaacgctgatgagaacgagctg
aaggccatcgcctcgcctcctgaggaaactcacgtctacaacgtggcagactttagcgtg
atgagcgacatcgtggaaggtctgaccaagggcgtctgcgaccgcgtggatcagctggac
aagcagatcaaaggaggaggagaatctgcccctcctccagactccttggccccccctcgt
gaccttgtgatagctgacataacagcgcgcagtttccgagtgacatggactcacgctacg
gggcaggtggagaaataccgtgtggtttattaccccgccagcggaggacaaccagaggaa
aaagtggtccaggggactgacaacagcgtggagctgaactacctcaactccctgacggaa
taccaggtggccgtgttcgccatctaccgcagctccgccagccaggccctcagaggaagc
gccaccacactggcgctgcctacggtgaacaacctggagctgcacgacatcacccacagc
accatgagggtcaggtggagggccgccatcggagctacgggttacatgatcctctacgcc
ccgctgaccgaaggggagtctgcagacgagaaggaggtgaaagtggcagactctgtgaat
gaagtggagctggagggactgagcccagacacagaatacacggtaacagtttatgccatg
tatggagaggaggccagtgaccccatgaccagccaggaaaccacattgccgctcatccca
gcaagaaacctgcgtttctctgaggtggaccacagctctgcccggctcacctgggaatcc
acctccaggttggtccggggttaccgcgtcatgtacgtcaagaccaacggggtgcagacc
acagaggtggatgttggcaaagtgacgacctatttgctgaagaacctgacctccctgacg
gaatacactgtcggtgtgtttgccatctatgatgaaggagaagctgaagctgtgaccgag
agcttcacaacaaaggttgtccccgaccctctggatctgaggagcagcgacatcaccgca
gagagcttcagggtgtcatggcaacaccccgcaactgatgtgactctgtatcgaatcacc
tggactcctacggacggaggggacagcaaggatgtcttggtggacagcaacgtgaacaca
tataaaatcacaggattaagcccggactcagagtatgaagtcctcctggcggccatctat
gctaatgagattgagagcgatgaggtcatcctcgtagagaacacggcaaagaggacaaca
actgttgccacaacctcctcaaaaccaagtcctcgacacggagtgaggaacatgaagatt
gatgatgaaaccacgttcagcttgcgggtgtcctggcagcccgtggactccagaaatgtc
cgacagtatcgactgagctacatcagcatgcggggagaccgagccacggagacgagaaca
gtccctcccgctcagaacagcatcgtcctgcagccgctcctgtccgacacggagtacaag
atcaccctcatacctgtttaccctgacggggatggaccagtggcctcacaagtgggacga
acccttcctctctcggctcctaagaaccttcgagtttcagaagaatggtacaaccgcttc
cggatcagctgggatgtcccgccttcgcccaccatggggtacagggttgtgtaccagcct
ctttctgcccctggaccagcactggagacgtttgttggggaagacgtgaacaccatgctg
attgtcaacctgctgagcgggacggagtacagcgtcaaagtcatcgcctcctacaccaca
ggatccagcgaagccctctccggcagagcaaagaccctgtacctgggagtgaccaacctg
agcacataccaggtgaggatgaccagtgtgtgcgctcagtggctgacccacagacacgcc
agcgcctacagggtggtcatccagccactgctcgggagtcaaaagcaggaaatccgactg
ggtgcaggatccaacctacactgtttcagcaacttaaagcccaacacagagtacaagatc
agtgtttacgctcagctgcaggacgggacggaaggacctgctgccaccgccactgtgaag
acattaccggtcccgacccaagcgccaaccaagccccccgccaccacgccgttacccaca
atcccctctgccaaggaagtctgcagagctgccaaagctgacttggtcttcctggtcgat
ggatcctggagtattggagacgacaactttctgaagatcatccgtttcctgtacagcact
gtcggagctctggaccggatcggaccggatggcactcaggtggccattgcccagttcagt
gacgatgcccggaccgagttcaagctgaactcgtacaccaacaaggagcgtctgctggac
gccgtcaacaagatctcctacaaaggtggaaacaccaagacaggccgggccatccagcat
gtgaaggagaacattttcactgcagagggaggagtcaggcgggggatccccaacgtgctc
gtggtcctcactgatggtcgatctcaagacgatgtcaacaaagtctccaaagaaatgcag
atggaaggctacattgtgtttgcaattggcttcgctgacgccgactacggcgagctggtg
agcatcgccagtaaacccagcgacagacacgtcttctttgtggacgacttggacgccttc
cagaagatcgaagagaagctggtgacctttgtgtgcgaagccgccacagccacttgtccc
tctgtacccatgagtggcagcacaactccaggtttccgtatgatggagctgtttggtctt
gttgaggaccggtacaacagcatctacggcgtttccatggtaccgggaacctttaatgcc
ttcccttctttccacctgcacagtaacgctctgctggctcagccaaccaggttcatccat
ccagaggggcttccatcagactacaccgtctccctgctgttcagactgctgcacgacact
ccagaggagcccttcgccctctgggagatcctcaacaacaacaacgagcctttggctgga
gtcattctggacaatggaggaaaaactttgactttcttcaacaacgactacaaaggggac
ttccagacggtcacttttgaggggccagagatcaagaagctcttctttggcagcttccac
aagcttcatgttgcaattagcaagactagtgccaaagtgtttgtggactgcaaaatggtg
tcggagagagcgattaatgcagcaggaaacatcaccacagacggactggaagttctgggc
aggatggtccgctccagagggaacaaggacaactctgcaccgtttcagctgcagaacttc
gacatcgtctgcagcacatcatgggccagcagagataagtgctgtgaacttcctggtctg
aggaaggaggcagagtgcccggccctgcccaaagcctgtacctgcacacaggacagtaaa
ggcccccccggcccccctggagtaccgggaggccctggaatcagaggagccagaggagac
cgtggagagccaggtccagtgggtcctgctggtgctgttggggacatgggtgtcccagga
ccccaaggacctcctgggccacagggacccagtggacgctccattatcggacccccaggt
tccccaggagagagagggcagaaaggggatccaggacaacaaggacaacaaggaattcct
ggaagacctggagctccaggaagggaaggacccccaggacccagaggacttgtgggtaaa
gatggaccacaaggaagacaaggccccccaggatctatgggaactccaggagctccagga
tccccaggaagtacaggtcctcctggaaaacagggagagctgggaccgccgggttctcct
ggaagcagaggagaaaaaggtgaccggggagacgtccaatcaacagcatcggttcaggcc
atcgccaggcaggtgtgtgagcagctgatccaaagtcacatggctcgttacaacaccctc
ctgacccaggtgcccagtccaccagtgtccatccgcacagtacctggacctccaggtgag
cctggccgacaaggatccccagggccgcaaggtgaacagggtccacctggcagaccagga
ttccctggacagaacggtcagaatggaaatccaggagaaagagggcaaccaggagaaaag
ggtgagaaaggatctcaaggtgttggtgtccaaggcccaagaggacctccaggacctcct
ggggctgcaggacagggcagacccggcagccagggtcagtctgggcgacctggaaaccct
ggagctcctggtcggcctggagtccccggtccagtgggccccccaggacctcagggatac
tgtgaccagaactcctgcgtgggctacaacgttggagagggtgaggatgtgactgaccgc
ggcgctgtctccgcagtccaactgccgcccaacgtcttccaaaactacggcgaggtcgag
gaggacgacccgtaccgctactaccagcccaactacccggctccgcagcccgtgtcgccg
gaagacccttcgctcgcctacggcgacattgagctcaggtctcccggcgttcaccgcagt
tctcggagtgtggggagcgaaggagagaaagtcgggcccaagaggagacgaaagagcaga
gcaaaagagcttccaggactaactaactga
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