Oryzias latipes (Japanese medaka): 101171527
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Entry
101171527 CDS
T02443
Symbol
mex3d
Name
(RefSeq) RNA-binding protein MEX3D
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101171527 (mex3d)
04121 Ubiquitin system [BR:
ola04121
]
101171527 (mex3d)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101171527 (mex3d)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101171527 (mex3d)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101171527 (mex3d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
zf-C3HC4_3
zf-RING_2
zf-C3HC4
KH_2
Prok-RING_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
101171527
NCBI-ProteinID:
XP_023821288
LinkDB
All DBs
Position
17:complement(22444814..22452980)
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AA seq
653 aa
AA seq
DB search
MPSPLFHPEIMDHEVVISSQHNGVGLPRETDQESREEDHQEVLRFALDQLSLMALEKVDC
GGGGSGGLVDTLDAPQGPGSEGCNGVGGSGFVDLQMLDHPGGSRDSPSSCSPSPEYYGSG
GYHMAGSHSVLHGEQTSVLCNRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNT
YIKTPVRGEEPVFIVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGGSGGGGSLPGPPH
LPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDR
AREEIETHITLRTGTFVDLQGDNDFHTNGTDVSLEGLGSLSGALGASLWSRAASHHPAPP
PPAPSPPPSLPVSMHHSSSRKMSSAVAYHTHNSGISSDTFNAARKANEGGSPTSPFSTGS
SSAGGGFTFGGDSTPGLPASDELGFEFSASNIWAPFVNGGGGNKVAGSSQPQPLRRNSSG
LSGGAITPRLSPTLPQDTVVGPLDHPLARRAQSDPLSTLSWLQSGSTGGGSFSGASSSSS
GGSSTGYSSCSASSLPGGSPTDSEGGGSSGGLSSGMLSRLKGGSGPGVAGLVGVGPALNR
DCFVCFESEVTAALVPCGHNLFCMECAGQICQSAEPECPVCHTPTTQCIRIFS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgccgagccctttattccaccccgagattatggaccacgaagtggtgatcagcagccag
cacaacggagttggtctgccccgagagacagaccaggagtcccgggaagaggatcaccaa
gaggtgctccgcttcgccctggaccagctgtcactcatggctctggagaaggtggattgt
gggggcggtggaagcggtgggctcgtcgacactttggatgcaccccagggtccgggctcc
gagggctgcaatggtgtgggtgggagcggctttgtggatctacaaatgctcgaccacccc
ggcggctccagagactcgccgtcgtcctgttctccatccccggagtactacggatcaggc
gggtaccacatggccggatcgcactccgtgctccacggggagcaaacctccgtcctctgc
aacaggaaacggagcgtcaacatgaccgaatgtgtgcctgtaccaagctctgaacatgtg
gctgaaatagtcgggaggcaaggctgtaagatcaaggctctgcgtgccaaaacaaacacc
tacataaagactcccgttagaggggaggagccagtgttcatcgtcacgggacgcagggag
gatgtggagatggccaaacgtgaaattgtgtctgcagcggagcatttctccatgatccgg
gcttcccgctgcaaagctggagggtctggaggaggaggctcactgccgggtccccctcat
ctaccaggacagaccaccatacaggtgagagtgccctacagagtcgtcggtttagtcgtt
ggaccaaagggggcaacgatcaagcgcatccagcagcagacccacacctacattgtgaca
ccaagcagagagaaagatccggtgtttgaggtgaccgggatgccagagaacgtggaccga
gcacgagaggagatcgagacccacatcaccctgagaactggaaccttcgtagacctgcaa
ggagacaacgacttccacaccaacggcactgatgtcagcttagaaggcctcggctcttta
agcggagcactgggagcttctttgtggtccagggcggcaagtcaccacccggccccgcct
cctcccgcgccgtccccgcccccttctctccctgtgtctatgcaccactcttccagccgt
aagatgtcctctgcagttgcatatcacacgcacaacagtgggataagctctgacaccttc
aacgccgcccggaaggccaacgaagggggcagccccaccagccctttcagcaccggctcc
agcagtgctgggggtggattcacatttgggggagattccaccccggggctgccagcttca
gatgagttgggctttgagttcagcgcttccaacatctgggcaccttttgtcaacggtgga
gggggcaataaggtagctggctcctcccagccgcaacccctacgccgcaacagcagcggc
ctcagcggaggcgccatcactccaagattgtctccaactctgcctcaggataccgttgtg
ggccctctggatcacccgctggcccgccgcgcccaaagcgaccccctcagcactctctcc
tggctgcagtccggcagcaccggcgggggttccttctctggagcctccagctccagctcc
ggcggctcatcgactggctactcctcctgctcggcctcttccctgcccggtggctccccc
actgactctgaaggaggtggcagcagcgggggcctcagctccgggatgctgagccgcctc
aaaggcggttccggccccggggtcgcgggcctggtcggcgtgggcccggcgctcaacagg
gactgctttgtgtgttttgagagcgaggtgacggcggccctggtgccatgcggccacaac
ctgttctgcatggagtgtgccgggcagatctgccagtctgctgaacccgaatgccccgtc
tgtcacacccccaccacacagtgcatccgcatcttctcctaa
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