Oryzias latipes (Japanese medaka): 101171586
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Entry
101171586 CDS
T02443
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03030
DNA replication
ola03410
Base excision repair
ola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101171586 (pole)
03410 Base excision repair
101171586 (pole)
03420 Nucleotide excision repair
101171586 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ola03032
]
101171586 (pole)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101171586 (pole)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
101171586 (pole)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
101171586 (pole)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
101171586 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
Sigma70_ner
APP_N
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
101171586
NCBI-ProteinID:
XP_004072453
LinkDB
All DBs
Position
9:13283115..13297448
Genome browser
AA seq
2291 aa
AA seq
DB search
MVLQNSGRYRTDRGPNGGDQENQDDGSSMSALKRLERSQFTDDMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SKKFQGKVAKLEMLPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVKREIAPAVRKNRER
EQSHDEYTSMLSSALSGVGVTTADEDGMSKSIVDQLDNVVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRSNAYPLEIIRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDNEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVETRAAVHGLNMHREIGFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQAFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAIEEEEKIPLEQVTNFNEV
CDEIKEKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKLPPLFPNGPPRAFHTLNREEQAKHE
KKRLADYCKKAYKKTHVTRLEQRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQDSGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
MVKEGFTNDQYHELVDPASLTYNTRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEIKRRGELQLIKIFQSSVFEAFLKGTTLEEVYTSVAKVADYWLDVLYS
KAANMPDAELFDLISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAESSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHKH
LDTDQQADIEDFGVPARPLQPAILISTKRKRASQGVDSQVESQDVELTQSWREILGPPPP
MGTTREERLVWLRYHKKKWELQLKQRKERRKRRKLLDGEAQPVGGGVIRDGPTTGLGSFL
RRTARSILDMPWQIVQIAETAHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKPEEGA
TYKKVNRMLPRSNMVYYLYEYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALV
RLGCVCMVNKHVVRDLAGREADSFDLDHLEMRSLAQFSYLEPGSVRHMYLYHHSQGHKAL
FGLFIPSQRKASIFILDTVRSNQMPNLSNLYSAERTALLERTTEELLPPEKHTFEIRAEN
DMKAISRALQRILLSYKEERRGPTLIAVQSNWELRRLTAGMPVLEEFPVIPVHVVDDINY
NVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRK
HNHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAPGCFSTVCVELDLQSLAVNTI
LQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALVSNTFRILKSMV
VGWVREITQYQNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLAAEFKRL
GSTVVYGNFNRIILCTKKRRIDDAVAYVEYITNSIHSREIFHSLSISFSRCWQFLLWMDP
SNYGGVKGKVSSDVLYGEGDTKQKKTRQGEEDEDGSEDEEEDNAEEEDEESDDVENLIES
NWNIMHYLPQTASCQQYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRVGSQASQQAL
GDLTALPGMISFSQEYVASELTQNIFTITQKIQKKVAGTRNVTQTSEMFPVLPGSHLPLN
NPALEFVKYVCQVLSLDTNIVNQVNKLKRDLLRLVDVGEFSDEAQFRDPCNSYILPEVIC
HHCNFCRDLDLCKDPSVAQDGAVVPQWFCSNCQAQYETDSVEVSLIEALQKKLMSYTLQD
LVCNKCKGVKEANMPLYCRCAGDFSLTFSAKSFSEQIMVFRNIASHYNMRFLEETIDWLL
AMSPQIEQRCN
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggttcttcaaaatagtggacgttacaggacggaccgcggaccgaatggaggagaccag
gaaaaccaggatgatgggtcctcgatgtcggccctcaagaggctggagcgcagtcagttc
accgatgacatggacgctcgcttcggattcgacaggatgaaggaaccgggggagaaaacc
gggtggttgatcaacatgcacccaacagagatcctggatgaggacaaaagaatgatcagc
gctgtggattattatttcatccaggaggatggaagcaggtttaaggtggcccttcccttc
aagccttatttttatattgctacaaaaaagaactgcgaaagagaggtcatatcatacttg
tctaagaagtttcaaggcaaagtggccaaacttgaaatgcttccaaaagaagatctagat
ctgccaaaccatctcgttggactgaagagaaactacatcaagctgtcgttcaacaccgtg
gatgacctcatcaaagtcaagcgggagattgctcctgccgtgcgcaagaacagagagagg
gagcagtcgcatgatgagtacacctccatgctgtcgagcgcgttgtctggagtcggtgtg
accacagcagacgaggacgggatgtcaaagagcatcgtcgatcaattagacaatgtggtg
gacatgagagagtatgatgtgccttaccatgtccgactgtccatcgaccttaagatccac
gttgctcattggtacaacgttcgctacagaagcaacgcttatcccctagagattatccgc
agggacgatcttgtggaacgaccagatccagttgttttggcctttgacatcgaaaccacc
aaacttcctctgaaattcccagatgcagagagtgatcagattatgatgatctcctacatg
atagacgggcaggggttccttattacaaacagagagattgtctctgaaaacattgaggat
tttgagttcacccccaaacctgaatatgaagggcccttcactgttttcaatgaggacaat
gaggctgctctcatacagaggtggtttgatcatgttcaagaaacaaaaccaaacatcttt
gtgacgtacaacggagacttctttgactggccttttgttgagactcgagctgccgtccat
ggactcaacatgcacagagagatcggtttccagaaggacagccaaggagagtacaagtcc
agccaggcaatccacatggactgtttaaggtgggtaaaaagagacagctacttacccgtg
gggagtcacaatctgaaggcagcggcaaaagctaagttgggttatgacccagttgagctg
gatccagaggaaatgtgccgaatggcaacggaagagccgcagaccttagccacatactct
gtgtcagacgcagtggccacatactatttgtatatgaaatatgttcaccccttcatcttt
gcgctgtgcacaatcatcccaatggagcctgatgaggtgctccggaaaggttccgggact
ctgtgtgaagccttgctcatggtgcaggcctttcacgccaacatcgtgttccccaacaag
caggaacaggccttcaacaagctgacagatgacggccatgttttggattcggagacctac
gtgggtggacacgtggaggcgctggagtcgggagtgtttcgcagcgacattccctgtcgg
tttaaaatgaatccagctgcgtttgacttccttttgcaaagagttgaaagaactatgcgc
catgctatcgaggaggaggagaaaatccctctggagcaagttactaatttcaatgaggtt
tgtgatgagatcaaagagaagctgacttccttgaaggaggttccaaacagaattgaatgc
ccactcatctaccatctcgacgtcggagcgatgtaccccaacatcattctcacaaaccga
ctgcagccgtctgctatggtagatgaagccacctgtgctgcctgtgactttaacaagcct
ggtgcgacctgtcagaggaggatggcctggcagtggagaggggaaatcatgcctgcaagt
cgcagtgagtttcaccgcatccagcagcagctcgagtctgagaagctacccccgcttttt
cccaacggccccccccgggcctttcacacactcaaccgggaggagcaggccaagcacgag
aagaaacgtctggcggactactgtaagaaggcctataagaagacgcacgtcaccaggctg
gagcaacgggtcaccaccatctgtcagagagaaaactctttttatgtcgatacagtcaga
gctttcagggaccggcggtatgaattcaaaggacttcacaaggtgtggaagaagaagctg
tcggcagctcaggacagcggagatgctgcagaggtgaagcgctgcaaaaacatggagatc
ctgtacgagtctcttcagctggcccataagtgcatccttaactctttctatggttacgtc
atgaggaaaggggcacgctggtattccatggagatggctggaatcgtgtgctacaccggc
gccaacatcatcactcaggccagagagctcattgaacagattgggagaccccttgagttg
gacacagatggcatctggtgtgtcctccccaacacctttcctgagaactttgtggtgaag
accagcaacgagaagaagcccaaggtgaccatctcttacccgggagccatgctgaacatc
atggtgaaggagggattcactaatgaccagtaccacgagctggtcgaccccgcttcgctc
acgtacaacaccagagcagaaaacagcatcttttttgaggtggacgggccgtacctcgcc
atgatcctgcctgcttctaaagaggaaggcaagaagctgaagaagaggtatgctgtgttc
aacgaggacggctctctggctgagcttaaaggttttgaaataaagagaagaggagaactc
cagctcattaagatttttcagtcgtctgtgtttgaggccttcctcaaaggtaccacttta
gaggaggtctacacgtctgtggccaaagtggctgactactggctggatgtactgtacagt
aaggcagccaacatgccagatgcagagctgttcgacctgatttcagagaatcgatccatg
tccagaaagctggaggactacggagagcagaagtctacgtccatcagcacagctaagagg
ctggcagagttcctgggagatcagatggttaaagatgctggtctgagctgtcgctacgtt
atctcacggaagccggaaggctcgcctgtcacagagagagccatccctctggccattttc
caggcagagtccagtgtaaagaagcatttccttcgaaagtggttgaagatgcccagcctg
catgacctggacatccgttctatacttgactggagttattacattgagaggttgggcagt
gcaatccagaaaatcatcaccatccctgcagccctgcaacaggtaaaaaaccctgtaccc
agagtccggcatcccgactggcttcacaagaaacttctggagaaaaacgatatctataaa
caaaagaaaataagcgagctgtttaccagcgagggcaagaggcaggtggcccacaagcat
cttgacaccgaccaacaagcagacattgaggacttcggggtgccagccagacccctgcag
ccggctattctcattagcactaagaggaagcgagcttcacagggggtcgacagccaggtg
gagtctcaagatgttgagctcactcagtcctggagagaaatccttggaccccctccacca
atgggaaccacaagggaggagcgtctggtgtggctgcgttaccacaagaagaagtgggag
ttgcagctgaagcaaaggaaggagagaaggaagagaaggaagcttctggacggtgaagcc
caacctgttggtggaggagtgatccgagatggacccaccactgggctggggagtttcctt
cgcagaacagcgcgcagcatcctcgacatgccctggcagattgtgcaaattgcagagacg
gcccaccctggtctgtataaactttgggcggtgattggaaatgacctccactgcatgaaa
ctcaacatcccacgtgtcttctacgtcaaccagaaggttccaaagccggaggaaggagct
acttacaaaaaggtaaaccgcatgctgcctcgctccaacatggtgtactacctttatgag
tactcggttccggaggacatgtaccaggagcacatcaatgagatcaacgctgacctctct
gcaccagacattgagggagtctatgaaacccaggtccctctgctgtttcgtgctctggtc
cggctgggttgtgtttgtatggtcaacaagcatgttgtgagggatctggccggcagggag
gcggactcctttgatctggaccaccttgagatgaggtcgctggctcagttcagctacctg
gagcctggaagtgttcgtcacatgtacttataccaccacagccaaggccacaaagctctg
tttggcctttttatcccctctcaacgcaaagcgagcatcttcatcctggacacggttcga
agcaaccaaatgcccaacctgagcaatctctactcagctgagcgcaccgccctcctggag
aggaccacagaggagctcctgcctccagagaagcacaccttcgagatccgagctgaaaat
gacatgaaggccatctcccgtgcgctgcagcgcatactcctgagctacaaggaggagcgg
cgcggcccgaccctcattgctgtgcagtcaaactgggaactgcgtcgacttactgcggga
atgccggtgcttgaagaattcccggtgatcccagtgcacgtggtggatgacatcaactac
aatgtgttggattggcaacgccatggcgcccgacgtatgatccgccattacctcaacctg
gacagctgcctgtctcaagcttttgacatggccaggtattaccacctgcctgtgggaaat
ctgccccaggatgtgtccatctttggttcggacttgttcctggccaggcatttacggaag
cacaaccacctgctgtggctttcgcccaccgccaggcctgaccttggaggaaaagaggcc
gacgacagtcggctggtgatggaaagtgatgaccgtggctctgtggagatcaatgctccg
ggatgtttctccacggtgtgcgtagagctggacctccagagcctggcagttaacaccatc
ctccaatcgcagcatgtcaacgacatggagggcggagccagtttgggcgtcagctttgat
gtgatccagcaggcctcgctggaggatatgatgtcaggaaaccagggagccagcgctctg
gcgagctacgacgagacagctctagtctcaaacaccttcaggatcctaaagagcatggtg
gttggatgggtccgggagatcacacaataccagaatgtatacgcagacaaccaggtgatg
cacttctaccgctggctgcgctcccccagctctctgctgtatgacccggcgcttcaccgc
accctccacaacatgatgaagaaggtcttcctgcagttggctgcagagttcaaacgtttg
ggctcaactgttgtgtacggaaacttcaacaggatcatcttgtgcaccaaaaagcggagg
atcgacgacgccgtcgcttacgtagaatacatcaccaacagcattcacagcagggaaatc
ttccactctttgtccatctctttctcccgatgctggcagttcctgttgtggatggaccct
tccaactatggaggtgttaaaggaaaggtctcctctgatgtcttgtacggagagggtgac
accaaacaaaagaaaaccagacaaggggaggaagatgaggatggcagtgaggatgaagag
gaggacaatgccgaggaggaagatgaagaaagcgatgacgttgagaatctgattgagagc
aactggaacatcatgcattatcttccccagacagcttcctgccagcaatacttcctcatg
attgtctcagcctacattgctgctgtgtaccacagcatgaaagaggagctgagacgtaac
gctcctggagcaacgccggtcaagagacgtgtaggcagccaggcgtcccagcaggcactt
ggggacttgactgcacttcctggaatgatctccttttcccaagaatatgttgccagcgag
ctgacgcagaacatcttcaccatcactcagaaaatccagaaaaaggtggccgggaccaga
aatgtgacccagacctcagagatgttcccagtactgcccggttcacacctgcctctcaac
aaccccgcactggagttcgtcaaatatgtgtgccaagttctttccctcgatactaatatt
gtgaatcaggtgaacaagctgaaaagagaccttctgcgcctcgttgatgtgggtgagttt
tcagacgaagcccagttccgggatccctgcaactcctacattcttccagaagtcatctgc
caccactgcaacttttgtcgggacctggacctttgcaaagatccatctgtggcacaggat
ggtgctgtcgtgccgcagtggttctgctcaaactgccaggctcagtatgaaacggattct
gttgaggtgtctctgatagaagctcttcagaagaagctcatgagctatacgctgcaggac
ctggtgtgcaacaaatgcaaaggggtgaaggaggccaacatgccgctctactgcagatgt
gctggagacttcagcctcacattctcagctaagagcttctctgagcagatcatggtgttt
cggaacatcgcatcccactataacatgaggttcctggaggagaccattgactggctgctt
gcgatgagccctcagattgaacagagatgcaactaa
DBGET
integrated database retrieval system
