Oryzias latipes (Japanese medaka): 101171595
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Entry
101171595 CDS
T02443
Symbol
col28a1
Name
(RefSeq) collagen alpha-1(XXVIII) chain isoform X3
KO
K23619
collagen type XXVIII alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ola01002
]
101171595 (col28a1)
Peptidases and inhibitors [BR:
ola01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
101171595 (col28a1)
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
DUF1194
Phage_TAC_14
QIL1
Motif
Other DBs
NCBI-GeneID:
101171595
NCBI-ProteinID:
XP_011479451
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Position
11:complement(20945570..20965506)
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AA seq
1192 aa
AA seq
DB search
MQWLMKVWVLALLLWIPAQCQKRRKKGQRDDNQVIMYEAKSLICPLEIMFLVDSSEKAAL
TLFEQQKQFVLGFSARLVRIDSPGWRVRLRLAVLQYSSTVSVEHNFRDWQDLDVFQSRVS
SMALIGHGTYSAYAITNATKVFKQETSSSSLRVVLLMTDGEDHPRSPSSVMAAATAKQNG
IRMFTIRLSGAPEQGAMGMKLRSMASIPAQQHMFSLSDSQLEDRLFQELSAFVKTKCQQP
QSCGCEKGEQGRPGNQGEPGEPGSEGAPGPKGSNGEPGVHGRPGMTGLEGRPGGKGEKGT
KGECGAAGTKGEKGDPGPPGPSGPKGEQGGRGVPGDPGPEGALGPKGERGPRGSSGPPGE
NGLGFPGPKGNKGNQGRPGPHGAPGGGEPGLQGPPGPSGIQGSPGLPGEGLAGPKGERGY
EGPKGSRGAPGLGIKGDKGNAGVPGLPGMLGFPGPGLQGEKGERGPIGPSGPRGPSGLGT
AGSKGDQGFPGEPGAPGERGMGEPGSKVRAKSRSARQMGTGLSADMQVLFQGEPGPEGAA
GIPGIPGEDGAVGAKGEMGSPGQRGLEGEPGTGISGEKGDRGERGPRGLPGSPGPIGPPG
AKGEPGSTGISGLPGPAGRGFPGAKGDPGSVGSPGPVGAPGMGILGPKGNKGSAGSVGPP
GHKGEGSPGPQGQPGPPGLQGETGPEGRGLPGPKGDRGSPGVLGLLGPPGIGIYGPKGFP
GQPGPSGPHGLPGKGLPGPKGEPGFQGPMGLRGLPGDGLPGEKGDQGKPGDRGKKGEQGD
AGAPGSPGPSGTLGEKGGPGLTKEEVIRIIHEICGCGVKCRGSPLELVFVIDSSESVGPE
NLEMVKDFVNALIDQMTVSWEASRVGVVLYSHEGVVVVNLQQQLSQQAIRDAVRGMPYLG
EGTFTGTAIRQATQLFQASRLGVRKMALVFTDGQTDPKDSMPLNEAVAAAHADGIKTIAV
GVRSKRKPLFEEFLAEIKTIASDPDEDHIYLVEDFRSLHTLESYILKHICDEGYLIRTTS
PPNDVFPPEQTRPGSSSQTDPEEEVGEEAEEEVEEEEEDWQLQTPTVPPVEMNTESMEDL
WNDLLNATFTPPDDEEQEGLELTSTLSPQTTPEELQESTPIRPHSPEALTKSPVSGGGCS
QPLDPGPCRLYRVRWYFDPQANSCAQFWYGGCHGNQNNFETEEICRKACVFT
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcagtggctcatgaaagtgtgggtccttgctttgcttttgtggattccggctcagtgc
cagaagagaaggaagaaagggcagagagacgacaaccaggtcatcatgtacgaggctaaa
tctctcatctgcccgctggagatcatgttcctggtggacagctcggagaaggcagcgttg
acgctgtttgaacagcagaagcagtttgtcctaggcttcagcgccaggctggtgcgcatc
gactcacccggctggcgagtgcgcctccgcctggctgtgctgcagtacagcagcaccgtg
tccgttgagcacaacttcagggactggcaggacctggatgttttccagagtcgggtctcc
tccatggctctcatcggccacgggacctactctgcctatgccatcaccaacgccaccaag
gtgttcaagcaggagacctcgtccagcagcctgagggtggtgctgctgatgacggatgga
gaggaccacccacgcagcccgagctctgtaatggccgccgccaccgccaagcagaatggg
attaggatgtttactatccggctatctggagcgccggaacagggcgccatgggcatgaag
ctgaggtccatggctagcatccctgctcaacagcacatgttcagcctcagcgacagccag
ctggaggacagacttttccaagagctgagtgcatttgtaaagaccaagtgtcagcagccc
cagtcttgtggatgtgagaaaggagaacaaggacgccctggaaatcagggggaacctggg
gagccaggctcagagggagctccaggtccaaaaggatctaatggggagcctggggttcat
gggcgccctgggatgacaggactggagggtcgacctggaggaaaaggggaaaaggggaca
aaaggggagtgcggcgctgctggaaccaaaggagagaagggggaccctggacctccaggc
cccagcggacccaaaggagaacagggaggaagaggggtgccaggagaccctggtccagag
ggagctttaggccctaaaggtgagcgtggaccaagaggttcctcaggacctcctggagag
aacggtctgggcttccccggtccaaagggcaacaaagggaaccagggcaggccaggacca
catggagccccaggtggaggagagcccggcttacaaggacctccaggaccttctgggatt
caaggctctccaggtctgcctggtgaaggtctggcaggaccaaagggggagcgaggctat
gaaggccccaaaggcagtcggggagctccgggactcggcatcaaaggtgataagggaaac
gcaggagtccctggtctgccaggaatgctgggcttcccaggccccggcctccaaggagaa
aagggggaacgaggacctattggaccctctggtcccagaggcccttcaggactgggcaca
gctggaagcaagggtgatcagggtttccccggagagcctggcgctccaggagagaggggt
atgggtgaaccaggatcaaaggtaagagcaaagagccgttcagcaaggcagatgggaacc
gggctctcggctgacatgcaagttctgttccagggtgagcctggacctgaaggagctgct
gggatacctggcattcctggagaagatggagctgtgggggccaagggagagatgggctca
ccgggacagcgaggcttggagggagagccaggcacaggcatatctggagaaaagggcgac
aggggggaacggggaccgaggggtctcccagggtctccaggcccaattggacctcctggt
gcaaagggagaaccgggcagcacaggaatcagcggcctacctggacctgctgggcggggc
ttcccaggagcaaagggagaccccggctctgtgggatccccaggaccggttggagcacct
ggtatgggaatcctggggcccaagggaaataaaggcagtgctggatcagtggggccgcca
gggcacaagggagagggctcaccggggccacagggtcagcctggtccacctggacttcag
ggagaaaccggacctgaggggagaggattgcccggaccgaaaggggacagaggctcaccg
ggtgtcctgggactgttgggtcctcctggaattggaatttatggaccaaagggctttcca
ggacagcctggcccttcaggaccacatgggctgccagggaagggactgcctggaccaaag
ggagagccggggtttcaggggccaatgggtcttcggggccttccaggtgatggtcttcct
ggggagaagggagatcaggggaagcccggagacagagggaagaagggagagcagggggac
gcaggagcacctggctcaccgggaccctcgggaacgcttggagagaagggagggccagga
ctcacgaaagaagaagtcatcagaatcatccatgaaatctgtggctgtggtgtgaagtgc
agggggagccctctggagctagtgttcgtgattgacagctctgagagcgttggaccagag
aaccttgagatggtcaaggactttgtgaacgccctcattgaccagatgacagtgagctgg
gaggccagccgggtgggcgttgtgctctacagccacgagggcgtggtagtggtcaacctg
cagcagcagctcagccagcaagccatcagggacgccgtcagaggaatgccatatctgggc
gaaggcacgttcacgggcacagccatccgtcaggccacccagctgttccaggcttcccgt
cttggcgtgaggaagatggccctggtgtttacggacggacagaccgatccgaaagacagc
atgcctctgaacgaagcggtggcggcggcccatgcagacgggattaagacaatagctgtt
ggagtgaggagcaaaagaaaacctctgtttgaggaattcctggctgagataaagacaata
gcttctgatccagatgaagaccacatctacctcgtggaagacttcagatcgctgcacact
ctggagagttacatcctgaagcatatttgtgatgaaggttacctcatcaggacaacctct
cctccaaacgatgttttcccaccagagcaaacccgtccgggttcctcatctcagacagac
cctgaggaggaggtaggagaggaagcagaggaggaagtggaggaagaggaggaagactgg
cagctgcagacccccacagtcccacctgtggagatgaacaccgaatccatggaggatctc
tggaatgacctgctgaatgccacgttcaccccaccagatgatgaggagcaggagggttta
gagctgacctccactttgagcccacagaccacacctgaagagctgcaggagagcactccc
atcaggccccactctcctgaagcgctgaccaagtcacctgtgtcaggtgggggctgttct
cagcctttggatccaggtccctgtcggctctatcgagtcaggtggtactttgacccccag
gccaactcctgcgctcagttctggtatggaggttgccatggcaaccagaacaactttgag
accgaagaaatctgcaggaaggcgtgtgtcttcacgtaa
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