Oryzias latipes (Japanese medaka): 101172111
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Entry
101172111 CDS
T02443
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101172111 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101172111 (vps8)
Membrane trafficking [BR:
ola04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101172111 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
Clathrin
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_UBOX
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_11
WD40_Prp19
zf-RING_2
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_WDR3_1st
zf-C3HC4
zf-C3H2C3
WDR55
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
101172111
NCBI-ProteinID:
XP_023805232
LinkDB
All DBs
Position
19:complement(24389861..24425280)
Genome browser
AA seq
1384 aa
AA seq
DB search
MAESADPNILLSSSSQLHLMEEEAIDDKEFDIPQVDTPPTLESILSQVEEGEEAFILEDT
MNTDNMDAHSYDTSSLASSDSGDPAHPKRRKRAQDARVAASGSVLRLSLLKGISAQIVAA
ADKVDAGLPTAVTMNSVIAVGTSHGLAFVFDTSQALRLCLGSKATGAEFGAVSALSINHN
CSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHIKFTDDPTLAVCNDSGGSVFE
LAFRRLMGMRSCDSRCLFSGSKGEVCCIEPLRSPPDYREHPITQYSLLAMASLTKILVIG
LKPTLNVWMTFPYSKSDPSSVPQLAWHFVSVQKMVNPILAFCKGDTVHFLLVKKEEMGTI
HVIKQRQLHLSCDIISLNWINSRTLVLVDSQEKLHVVDRPTQEVLETLDLEQVQLVYNSR
HFKSLATGGNVSQALALVGEKACYQSVSSYAGQILCLGTKSAHIMALRNWNECIDLMLKQ
EHFVEALSLAWSFHEGTAKAMVGLHGDAAKRKAVVSDKMVELLLQFAEHALKKHPEQGKS
QTGEQNFQEVVPVLLEYSLLLRRLDLLFDELYPRVAASSLAKAVFLESLESYIVSSRLDH
LPTPVIKDLLSHYHNNGMMDSLERCIVHLDVTSLDIQQVVQVCWTNRLYDAVIYIYNRGM
NDFITPMEKLFTAIGPAVKGGRSLTDEDVVMGNKLLVYISCCLAGRAYPLGDIPADLVVQ
VKNQVFDFLIRLHSNDSSEEEDVFPFIRTLLHFDTREFLNVLSMTFEDFKNDKQALEYQQ
RIVDILLQVMVDNQDFTPSQVGGLFTFLARQLVKPDNTLFVNRKLFDQVLEFLCCPENEC
RQAERQQVLLDLLQVEGVVQFNEDRLLVLAEKAQFYQICEFLFEKKHLYDRIIDCYLKDP
VRQCEIFSYIHNLLSMPGYSCEEKQTVRSKVLQHVQELVILDPTKSADLVSCHFSDCVNA
IISELQDPPLLFSFLRCLLEPREGPGPTLCPDQDLHELLLGLMCQFDPQQLLTFLHTSQH
YRLEEAILITEKHGCLEARAYLLEKKGDVHGAFAGLLQMLKDRLQHFASESLTEVNDGPE
HREALRGVQESLDVIIAFSHRNCPSLDQEQRKTLWFPILDALMASQKEVKRSTTSFEGLK
EMTLKVLNHMSSFISLPAIIQQILQDPVYGRGKLSEIQGLILGMLDTFNYEQTLLETTTS
LLNHDLHWSLAHLRAAVTRGLHPLQEHCNICLQHYKRRPDSREEVVVFSCGHLYHRSCLQ
QKDLASEQWRCCKCSSSHMLKRGPAGRPSRSRSTSLAQTHVASGHHDAAAAAHKKRVLAA
ATLDLQQEQSWDLTRCLFRGPARLSIIAEPSHGDATEKTVLQPPGQESSESFFLKLAPPP
LFEE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtctgcggacccgaacatcctcctctcctcttcttctcagctccatctgatg
gaagaggaggcgattgatgataaggaattcgacattccccaagtggacacgccccccacg
ctggagagcatcctgagtcaggtggaggaaggcgaggaggcttttattttggaggacacc
atgaacactgacaacatggacgcccactcctacgacacctcctccctcgccagctccgac
agcggtgacccagcccaccccaaacggaggaagagggctcaggacgccagggtggcggcc
agcggctccgtcctccgcctcagcctcctgaagggcatctctgctcagatcgtggccgcc
gctgacaaagtggacgccggcctgccgaccgccgtgaccatgaacagtgtgattgctgtg
gggacctctcatggactggcttttgtcttcgataccagccaggctctgcggctgtgtctg
ggctccaaggccaccggagcagagtttggagccgtctctgctctcagcatcaaccacaac
tgctcccgactcctctgtgggtttgccaaaggacagattaccatgtgggacctggccaat
gggaagcttctgaggaccatcactgatgctcatcctccaggaacggccatacttcacatt
aagttcacagatgacccgactctggccgtctgcaacgacagtggaggatctgtgtttgaa
ctggccttcaggcgtctgatggggatgcgctcgtgcgactccagatgcctcttcagtggc
tctaaaggagaggtgtgctgcattgaacctctgcgctctcctccagattacagggaacat
cccatcacacagtactctctgctggcgatggcctcgctcaccaagattctggtgattgga
ctgaagcccacactcaacgtttggatgacttttccttacagcaagtcggatccatccagt
gttccccagctggcctggcactttgtttccgtccagaagatggtcaacccgatcctggct
ttctgtaaaggagacaccgtccatttcctcctggtaaagaaggaagagatgggcaccatc
catgtaataaaacagcgacagctgcacctgagttgtgatatcataagcctaaattggatc
aacagtcgcacgctggttctggtggacagccaggagaagctccatgttgtagacagaccc
acccaggaggtcctggagaccctggacctggagcaggtgcagctggtctacaacagccgg
catttcaagtcgttggccaccggagggaatgtctcccaagctctggctctggtgggggag
aaggcctgctaccagtctgtttcaagctatgcagggcagatcctgtgtttgggcaccaag
tctgctcacatcatggctctgaggaactggaacgagtgcatcgacctcatgttgaagcag
gagcattttgtggaggcgctgagtctggcgtggtcattccacgaaggcaccgctaaggcc
atggtcggcctgcatggagatgcagccaagcggaaggccgtggtcagcgacaaaatggtg
gagctgctgcttcagtttgcagagcatgccctgaaaaagcacccagaacaaggaaagagc
caaaccggcgagcagaacttccaggaggttgttccagtgctgctggagtactctctgctg
ctgcgcaggctggacctgctgtttgacgagctgtacccacgcgtggcagcgagctcgctg
gctaaagccgtctttctagagtcgctggagtcctacatcgtcagttcccgcctcgatcac
ctccccactcccgtcataaaggacctcctctcccattaccataacaacgggatgatggac
agcctggagagatgcatcgtccacctggatgtgaccagcctggacattcagcaggtggtc
caagtctgctggacgaaccgtctctacgatgccgtgatctacatctacaaccgtggaatg
aacgacttcatcactccaatggagaaactttttacagctattggtcctgcagtgaaggga
gggaggagcctgacagatgaagacgtggtgatggggaacaagctgctcgtctacatcagc
tgctgtcttgcaggaagagcatatccacttggagacattcctgctgacctcgtggttcag
gtcaaaaaccaggtgtttgattttctgatccgccttcattctaatgactcgtcggaggag
gaggacgttttcccttttatccggacgctcctccactttgacactcgggaatttctcaac
gtactttccatgacatttgaagacttcaagaatgacaaacaggctctggagtaccagcag
aggatagtagacatcttactgcaggtgatggtggacaaccaagacttcactccgtcccaa
gtgggcgggctcttcacctttttggcgcgtcagctggtcaagccggacaacacactcttc
gtcaacaggaagctctttgatcaggttctggagttcctgtgttgtccagagaatgagtgt
cgtcaggctgaacggcagcaggttctgctggacctgctgcaggtggagggcgtggtccag
ttcaatgaagatcggctcctggttctggcagaaaaggcgcagttctaccaaatctgtgaa
ttcctttttgagaagaagcatctgtacgacaggatcatcgactgctacctgaaggacccg
gtccggcagtgtgagatcttcagctacatccacaatctgctgtccatgcccggctacagc
tgtgaggagaagcagacggtccggagcaaagtgctgcagcacgtccaggagctggtgatc
ctggacccgacaaagtcagctgacctggtgtcgtgtcacttctctgactgtgtgaacgcc
attatctcagagcttcaggatccgccgctgctcttcagcttcctccgatgtctgctggag
ccacgggaggggcctgggcccactttgtgtcctgatcaggacctccatgaactcctgctg
ggtttgatgtgccagtttgacccccagcagctgctgaccttcctccacacatcgcagcac
tacagactggaggaagccatattgataacggagaagcacggctgccttgaagcccgagcg
tacctgctggagaagaaaggcgacgtccatggagcgtttgctggcctgctgcagatgctg
aaggacaggttgcagcactttgcctctgagagtctcacagaggtgaacgacggtccagag
catcgtgaggctctgaggggggtccaggagagcctggacgtcatcatcgcctttagtcat
cggaactgtcccagcctggaccaggagcagaggaagactctgtggtttccgattctggat
gctttgatggcttctcagaaggaagtgaagaggtccacgacctcctttgagggtctgaag
gagatgacactgaaggtcctgaaccacatgagcagcttcatttctctgccggccatcatc
cagcagatcctgcaggatccggtgtatggcagaggaaaactgtctgagatccagggactc
attctgggaatgctggacaccttcaactacgagcagactttacttgaaacgaccaccagc
ctgctcaaccatgacctgcactggtctctggctcacctgcgcgccgccgtcacacgggga
ctccacccacttcaagagcactgcaacatctgcctgcagcactacaagaggaggccagac
tccagggaagaggtggttgtgttcagctgtggacatctgtatcaccgctcatgcctgcag
cagaaggacttggcttcagagcagtggaggtgctgcaagtgttcctccagccacatgctg
aagaggggccctgcagggaggcccagccgcagccgcagcacctccctggctcagactcat
gttgcatccggccatcatgacgcagcagcagcagctcacaagaagagggttctggctgca
gccacgttggacctacagcaggagcagtcctgggatctgacccgctgcctgttcagagga
ccggcccggctgtccatcatcgctgagccctcccacggcgacgccacagagaagacggtc
cttcagcccccaggccaagaaagcagcgagtctttcttcctcaagctggcccccccgcct
ctgtttgaagagtag
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