KEGG   Oryzias latipes (Japanese medaka): 101172149
Entry
101172149         CDS       T02443                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03030  DNA replication
ola03410  Base excision repair
ola03420  Nucleotide excision repair
ola03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101172149 (rfc4)
   03410 Base excision repair
    101172149 (rfc4)
   03420 Nucleotide excision repair
    101172149 (rfc4)
   03430 Mismatch repair
    101172149 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ola03032]
    101172149 (rfc4)
   03036 Chromosome and associated proteins [BR:ola03036]
    101172149 (rfc4)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101172149 (rfc4)
DNA replication proteins [BR:ola03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101172149 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101172149 (rfc4)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101172149 (rfc4)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101172149 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101172149 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_assoc_2 AAA_30 AAA_16 AAA_22 AAA_11 Mg_chelatase AAA_24 DUF815 AAA_19 SLFN-g3_helicase RuvB_N AAA_14 AAA_28 Gp44_lid AAA_5 KH_DUF2096_C ResIII AAA_7 DNAX_ATPase_lid AAA_3
Other DBs
NCBI-GeneID: 101172149
NCBI-ProteinID: XP_004067597
UniProt: A0A3B3H3F4
LinkDB
Position
4:complement(1759098..1768452)
AA seq 355 aa
MQAFLKGAGVGKPLKDKGPAGPSADKKPKTVPWVEKYRPKCVDEVAFQEEVVAVLKKSLE
GADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKTFA
QLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRII
EPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFLQC
AARLNMDKEITDRAIVEIAGVVPSKMIEGLLQTCFKGTFERLEVTVRNLVNDGYAATQIL
SQLHESIIESDLKDKDKSIITEKMAVVSKCLSDGADEYLQMLSLCSVIMQRAAQS
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgcaggcatttctcaaaggagcgggtgtcggtaaacctctgaaggataaagggccggct
gggcccagcgcagacaagaaaccaaagactgttccttgggttgagaaatacagaccaaaa
tgcgtggatgaggtggccttccaggaggaggtggtggcggtgctgaagaagtccctggaa
ggagcagatcttccaaacctgctgttctacggcccgcctggaacaggaaagacttctacc
atcttagcagctgctagagaactttatgggccggagctgtaccggcagagggtgctggag
ctgaacgcctcggatgagcgaggcatccaggtcgtcagagagaaagtgaaaacctttgct
cagcttaccgtggcaggaacccgtccagatggaaagctgtgtcctccctttaagatcatc
attctggacgaggcggactccatgacggcgccggctcaggcggctctaaggcggaccatg
gagaaggagtcccgtaccacccgtttctgtctcatctgtaactacatcagcaggattatt
gagcccctaacatccagatgctccaagtttcgatttaaacctttggccaatcgaatccaa
gaagagcgactgctggagatctgtgagaaggagaacctcaaatacaccagagagagtatt
gaggcactggtgcaggtgtcagagggggacctgcggaaagccatcacattcctgcagtgt
gctgctcgactcaacatggacaaggagatcactgacagagctattgttgaaatagccggg
gtggttccttccaaaatgatagagggcttgctgcagacatgttttaaggggacatttgag
agactggaggtaacagtcaggaacctggtgaatgacggttatgcagccacacagatcctc
agtcagctgcatgagtccatcatagagagtgacctgaaggacaaggacaagtccatcatt
acagagaagatggcggttgtgagtaagtgcctctcggacggagcagatgaatacctgcag
atgttgagtctgtgttctgtcatcatgcagcgggccgcccaaagctga

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