Oryzias latipes (Japanese medaka): 101172150
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Entry
101172150 CDS
T02443
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X3
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ola01002
]
101172150 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101172150 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ola04147
]
101172150 (usp13)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
101172150 (usp13)
Peptidases and inhibitors [BR:
ola01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
101172150 (usp13)
Ubiquitin system [BR:
ola04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
101172150 (usp13)
Exosome [BR:
ola04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
101172150 (usp13)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
101172150
NCBI-ProteinID:
XP_004067909
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All DBs
Position
4:complement(8990810..9029057)
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AA seq
859 aa
AA seq
DB search
MAADLGELLVPYMPTIRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKTTGAAGGAIPRRRNGKVFLDLELNRDFNGEDFEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAVLNAPSAYKKQEPESWEEEIQVSRHARSLRQLN
NGVRIPPSGWKCQKCEMRENLWLNLKDGAVLCGKWFFDGSGGNGHALEHYKETNYPLAVK
LDTITPDGADVYSFEEEEAVLDPHISEHLSHFGIDMLQMQKRTENGHHTENNSRLRVSEW
EVIQESGMKLKMVYGSGYTGIKNLGDSCYLSTVMQILFSVPDFQRMFVGNLQRIFDYSPL
DPTQDFATQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEHKQQQRGISPRMFKALVSKGH
PEFSSNRQQDAHEFLLHIINLVERNSTGLENPSDSFRFLVEERIQCCQTRRVRYSQRVDY
CIQLPAPIEAATNREELLAYEAKRKEAEENMGTPPEPVRARIPFTACLQAFTEPENVPDF
WSSALQAKSAGVKTSRFASFPEYLIVQIKKFTFGVDWVPKKLDLTIDVPDFLDLSRLRAT
GLQADEEELPDLMPPIVLPEDTRENSMSSTDSPEMDETAVMQLAEMGFPLEACRKAVYYT
GNMGPEMAFNWIIAHMEEPDFAEPLTLPSLMDPGPSTSDGPTGATPIGNSPPEESIAILT
SMGFPRAHSIHALKATNNNLERALDWIFTHPEEEETDALSDMADTEPNDNAFSSVNSHSD
NTLSPDREGSGSRVKDGPGRYELFAFISHIGASTMSGHYVCHIKKEGRWVIYNDHKVCLS
ERPPKDLGYIYFYHRLSSS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacttgggagagctgttggtcccctacatgcccaccatccgagtccccaga
accggagacagggtcttcaagagcgagtgcgccttttcgttcgactcccccgagtctgag
ggaggcctctatgtgtgcatgaacacattcctgggctttggtcgggagcacgtagagagg
cattatcgcaaaactgggcagagtgtttacatgcacctgaaacgtcacgtcaaagagaaa
accacaggagctgcaggcggtgccatccccagacgaagaaatggaaaagtatttctagat
ttagagcttaaccgtgattttaatggtgaggactttgaatatgaggatgaggccaagctc
gtcatttttccagaccacttcgagatccctttaccaaatattgaggagttacccgctctg
gtgactattgcttgtgatgcagttctcaacgcgccatcagcttacaagaagcaggagccc
gagtcgtgggaggaggagatccaggtctccagacacgcccgaagcctgagacagctgaat
aatggggtgcggatccctcccagtggctggaagtgtcagaaatgcgagatgagagaaaac
ctgtggctcaacctgaaagacggggcggtgctgtgtgggaagtggttctttgatgggagc
gggggcaatggccatgctctggagcactacaaagaaaccaactacccgctggcagtcaaa
ctggacaccattaccccagacggagcagatgtttattcgtttgaggaggaagaagctgtt
ttggacccacatatatcagagcacctatcacactttggaatagatatgctacaaatgcag
aaaagaacagagaatggacaccacacagaaaataactcgcgattgcgggtcagtgaatgg
gaggtgatccaggagtctgggatgaagctgaagatggtgtatggttctgggtatacgggc
atcaagaacttaggagacagctgctacctgagcacagtaatgcagatcctcttcagcgtc
cctgactttcagaggatgtttgtgggtaatcttcagaggatatttgactattcgcccctg
gaccccacccaggactttgcaacacagatggctaaactgggacacgggctgctctcaggc
cagtactccaaaccccccatgaaatctgagctcattgaacaggtgatgaaagaagaacac
aagcagcagcagaggggcatctctcctcgaatgttcaaagctctggtgagcaaaggacac
ccggagttttcctccaaccggcaacaagacgcccacgagttcctcctgcacatcatcaac
ctggtggagaggaatagcacaggcttggagaatcccagcgacagcttccgtttcctggtg
gaggagcggattcagtgctgtcagactcgccgcgttcgttacagccagcgagtcgactac
tgcatccagctgccggctcccatcgaggcagcgaccaatcgagaggagctgctggcctac
gaggccaagcggaaagaagctgaggagaacatggggactcctcctgaaccagttcgggca
cggattcctttcaccgcctgcttacaggccttcacagaaccagaaaatgtcccggacttt
tggagctcagcgctgcaggccaaatcagctggagtcaaaacgtcccgttttgcctctttt
ccggaatatctgattgtgcagatcaagaaattcacatttggagttgactgggtgccgaag
aagctcgatttaaccatcgatgttccagatttcttggatctgagccggctccgagccacg
gggctgcaggcagacgaggaggagctgccggacctcatgcctcccatagttctgcctgaa
gacaccagagaaaactctatgagctctacagactctccagagatggatgagacggcagtg
atgcagctggcggagatgggctttccactggaggcctgcaggaaggcggtgtactacaca
ggaaacatgggacctgaaatggcttttaactggatcatagcacacatggaggagccagac
tttgcagaacctcttactttgccctccctgatggatcctggcccctccaccagtgacggc
ccaacaggcgccacccccatcggaaactcccctcctgaggagagcattgccatcctaaca
tcgatgggcttccctcgagctcacagcatccacgcccttaaagcaacgaataataatctc
gaacgagctcttgattggatcttcactcacccagaggaggaggagactgacgccctctca
gacatggcagacactgagcccaatgacaacgccttctccagcgttaattcacacagtgac
aacacgctatctccagacagagagggatcaggctcccgagtcaaagacggacctggacgg
tacgagctctttgccttcatcagccacatcggagcatccaccatgtctgggcattatgtc
tgtcatatcaaaaaggaggggaggtgggtgatctacaatgaccacaaagtgtgtttgtca
gaaagacctccaaaagacttgggctacatctacttttaccatcgactgtctagcagttaa
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