Oryzias latipes (Japanese medaka): 101172396
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Entry
101172396 CDS
T02443
Name
(RefSeq) retinal-specific ATP-binding cassette transporter isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101172396
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ola02000
]
101172396
Transporters [BR:
ola02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
101172396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
101172396
NCBI-ProteinID:
XP_023820613
LinkDB
All DBs
Position
17:complement(31320777..31358760)
Genome browser
AA seq
2311 aa
AA seq
DB search
MDTSSQIRLLLWKNWTLRKRQKKRFLVEIFWPVLLFVGLVWLRKANPLYQQHECHFPNKA
MPSAGILPWIQGIFCNVNNPCFRHPTGGESPGVVSNYNSSVLARFYVDIQELLLNQTDIQ
NYGRLWRELTSFSDFMDVLRRNPSALAGRGLRIEDMLKDDELLTAYLLRDVGLPESLLYQ
LLNAKLRLEQFAFGVPDLQLKDIACSQALLERFIIFPSRMGLHGVRNAMCALSQQRLQRI
EDVLYANLDFFKIFKLMPQVLHRGSQGIDLHFWGQVLSTASDKIQILMQRDSSQDFLKAV
SPFFQAGGPSSFTQLMSSVSSLLCGYPEGGGSSVLSFNWYEDNNYKVFLGVNGSKKQDYV
YDHTATPFCNALMQTLESNPVTKIMWSAVKPLLMGKILFTPDAPAARKIIKSANTTFEQL
ERLQNMAKAWQELAPQLQDFFNHSVQMNMIRDTLANPTVRHFLDTRLAQTDFSTKDILGF
LNHRVEEDGESGAARFTWRSVFHLLDQVINMFNQYGECVSLDKFVAYTDESQMTHQALHL
LEENKFWAGVVFMDMLPWTSSVPPHVRYKIRMDVDAVERTNKIKDRYWDPGPRADPVEDQ
RYLWGGFAYLQDMIEHGIIKLHTGNDWPLGVYIQQMPYPCYVDDLFMITLNRCFPMFMVL
AWIYSVSMTVKSIVLEKELRLRETLKAMGVDSGVMWYTWFIDSFIMMTVSTALLTTIIMG
GKVLNYSDPVLVFFFLLTFTVATIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHVLCFA
WQDRITKNMKLAASLLSPVAFGFGTEYLSRYEEQGLGLQWNNIQTSPLEKDTYSFFTSIF
MMTLDAILYAVLAWYLDNVFPGQYGISRPFYFPLLPSYWTGPAPTTMQASHAGPEEPELD
DQKKEVESRDTPETCNGSASRKTCKHQSRRERLQREKEVLKQQQQEEAAAQDAGQEGQLF
FEPDPPGLVLGVQIDDLVKVFAGSARPAVNCLSINFYEGQITSFLGHNGAGKTTTMSILT
GLYPPTSGTAFINGRDIRTDMDVIRTSLGMCPQYNILFSHLTVEEHILFYSLLKGRTEEE
AKLEVEDMLVDLGLPNKRDEEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSGVDPYSR
RSIWDLLLKYRAGRTVLLSTHHMDEADLLSDRIAIISKGQLYCCGSPLFLKNCFGVGFYL
TLVRRIKDMRKLEKECDCASDCSCACSICTRYKDQSQHQPHMLDRVLEGDVESISSLIHH
HVPEAKLIESIGQELTYLLPNKGFKHRAYASLFRELEDTLADMGLSSFGVSDTSLEEIFL
KVTADGEAASKATTAEQWMLQGRNAGSRVAAGAEEDQNGVNGSPPASDSSEGRGSRQVKG
ASLVLTQFYALLVKRFHHAARSQKDFLAQIVLPATFVLVSLIFTLIVPPFGEYPSLTLSP
WMYGQQMTFFSNERPFDPKMKHFIERLLAWPGFGTRCMQGEPLGMTCNNSISEWEEPIVP
PEVMKIFHSQEWSPRNPSPSCQCSSSKKLTMMPICPAGAGGPPPRQRLEATGDTLLDLTD
RNISDYLLKTYPSLIRTSLKSKYWVNEQRYGGLSVGGQLPVLDVDPKDIRSVFYQLGKIL
NITGGHFCVLTLRDVGTFLRFMESEFNIKVWYNNKGWHAMVAYMNVANNAILRAFLPPAH
RSEEFGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFVLYLIQERVT
KAKHLQFVSGVSPLVYWVANFFWDMMNYTVSTAMVVGIFMAFDKKCYTSQKNLPALAALL
LLYGWSVTPMMYPMSYIFSIPSTAYVSLSCINLFVGINSSAITFILELFENNRSLLMFNE
WLKKCLLVFPHFCLGRGLIDMAMNQAVTDVYARFGEEFSLDPFRWDFLGKNLTFMAVEGF
VYFLLNLLIQYRFFFDHWLSDHQQCPIQEDEDVAAERKRIYDGGGKMDILQIRDLSKTYV
GRKRPAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGDASVAGYSILTQML
DVHQNMGYCPQFDAIDELLTGMEHLYLYARLRGVPESEIPRVAEWGIRKLGLTEYASRCA
GTYSGGYRRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIMSVIQDGRAVVLTSH
SMEECEALCTRLAIMVNGTFKCLGTIQHLKYKYGDGYVVTMKIKAAKAGWPPELEPVETF
METSFPGCVQREKHYNTLQYQIASSSLARIFQLVVVNKDRLSIEDYSVSQTTLDQVFVNF
AKQQTAEDEDALRRTVNARKDTKISPAKRKR
NT seq
6936 nt
NT seq
+upstream
nt +downstream
nt
atggacaccagctctcagatccgcttgctcctctggaagaactggactcttcgtaaaaga
cagaagaaacgcttcctggtggagattttctggccggttctgctgttcgttggtctggtg
tggctgaggaaggccaatccgctgtaccagcagcatgaatgtcacttccccaacaaggcc
atgccctcagctgggatcctgccctggatccagggtatcttctgcaacgtcaacaacccc
tgcttcagacatccaacagggggagagtctccaggcgtggtgtccaactacaacagctca
gtgttggcacggttctacgtggacatccaggagcttctgctaaaccagacagacatccag
aattatggcagactgtggcgagagctgacgtctttctcagacttcatggacgttttacgc
agaaacccttctgctttggcaggccgtgggctgagaatagaagacatgctgaaagacgac
gagcttctcacagcttacctcctcagagatgtgggtcttccagagtcgctgctttaccag
ctgctcaatgcaaagctgcgcctggaacagtttgcattcggggtcccggaccttcagctc
aaggacatagcgtgcagccaggcgttgctggagcgcttcatcattttcccgagtcgaatg
ggactccacggagtccgcaacgccatgtgcgccctgagccagcagcggctgcagaggata
gaagacgtcctctacgccaacctggacttcttcaagatcttcaagctgatgcctcaggtt
ctgcatagaggatctcaggggattgatctgcacttctggggccaagtcctcagcacggca
tccgacaagatccagatactcatgcagcgggacagctctcaggacttcctgaaggccgtc
tctccgttctttcaagcgggaggtccttcatccttcacccagctgatgtctagcgtgtcc
agccttctctgcggatacccagaaggggggggctccagtgtcctgtccttcaactggtac
gaagacaacaactataaggtgtttttgggggtgaacggcagcaagaagcaggactacgtc
tacgaccacacagccactccgttctgcaacgctctcatgcagacgctggagtccaacccc
gtcaccaaaatcatgtggagcgccgtcaagcccctcctgatggggaagatcctcttcact
ccagacgctccagccgcccgcaagatcataaagagtgccaacacaacctttgagcagctg
gagaggctccagaacatggccaaagcctggcaggagctcgctcctcagctccaggacttc
ttcaaccacagcgtccagatgaacatgatcagggacactctggctaaccccacagtgagg
cacttcttggacacgcgtctggcacaaactgacttcagcaccaaggacattcttggcttt
ctgaaccacagagtggaggaagacggagagtctggagcggccaggttcacctggagaagc
gtcttccacctgctcgatcaggtcattaacatgttcaaccaatacggagagtgtgtcagt
ctggataagtttgtggcctacacagatgagtcccaaatgacccatcaggctctgcacctc
ctggaggagaacaagttttgggctggagtggtcttcatggacatgttaccctggacctcc
agcgttcccccacatgtccgatacaagatccgcatggatgtggacgccgtggagcggacc
aacaagatcaaggacaggtactgggatcccgggcccagagcggaccctgtggaggaccag
cgatacttatggggggggttcgcttacctgcaggacatgattgaacacgggatcatcaag
ctccacacgggcaacgactggccgctcggcgtctacatccagcagatgccgtacccgtgt
tacgtggatgacctcttcatgatcacgctgaaccgctgcttccccatgttcatggttctg
gcctggatctactccgtgtccatgaccgtgaagagcatcgttctggagaaggagctgcgc
ctccgggagaccctgaaggccatgggggtggacagcggagtcatgtggtacacctggttc
atcgacagctttatcatgatgaccgtcagcaccgcactgctcaccaccatcatcatgggt
gggaaggttctgaactacagcgacccggtcctggtctttttcttcttgctgacgttcact
gtggcaaccatcatgcaatgcttcttaatgagcgttttcttcaacaaagccaacctggca
gccgcctgcagtggaatcatctacttcaccctctatctgcctcacgtcctctgcttcgcc
tggcaggaccggatcaccaaaaacatgaaactggccgcgagcttgctgtctccggtggcc
tttggctttggtactgagtatctgtcccggtacgaggagcagggactgggtctccagtgg
aacaacatccagacgagtcctttggaaaaagacacctactccttcttcacatccatcttc
atgatgacgttggatgccatcctctatgctgtcttagcctggtacctggacaatgtcttc
ccaggacagtatggcatcagccggcctttctacttccctctgctgccgtcctactggacg
ggtcccgcaccgacaaccatgcaagcatcccatgcaggtccagaggagcctgagctggac
gaccagaagaaggaggtggagagcagagacactccggagacctgcaacggctcagccagc
aggaagacctgcaaacaccaaagcaggagagagcgcctgcagagggagaaggaggtcctc
aagcagcagcagcaggaggaggcggcggctcaggacgccggacaggaaggtcaactgttt
tttgagcctgacccccccggcctggttttgggtgtgcagattgatgacctggtgaaggtg
tttgctggaagtgcacgtccagccgtcaactgcctgagcatcaacttctatgaggggcag
atcacatccttcttagggcacaacggagcaggaaagaccacaacaatgtcgatcctgacc
gggctgtatccccccacctctggaaccgccttcatcaacggcagagacatcagaacagac
atggacgtcatccggacctctctgggaatgtgtcctcagtacaacatcctcttcagtcat
ctcacagttgaggagcacatcctcttttattcgctgctgaaaggacggacggaggaggaa
gccaagctggaggtggaggacatgctggtggatctcgggctgcctaacaagagagacgag
gaggctcagaacctctcaggcggaatgcagaggaagctgtcagtggccatggcctttgtt
ggagggtcaaaggtggtcattctggacgagccaacatctggagtggacccgtactccaga
agatccatttgggacctcctgctgaagtacagagctggccgcaccgtccttctgtccacc
catcacatggacgaggccgacctgctgagcgaccgcatcgccatcatctccaaggggcag
ctgtactgctgcggctccccgcttttcctcaaaaactgctttggcgtgggtttctatctc
actctggttcgccgcataaaagacatgaggaagctggagaaggaatgcgactgcgcctct
gactgctcctgcgcatgctccatctgcaccagatacaaagaccagtcccagcatcagccc
cacatgctggacagggtcctggagggcgatgtggagagcatcagcagcctgatccaccac
catgtcccagaagccaagctcattgagagcatcggacaggagctgacctatctgcttccc
aacaaaggcttcaagcatcgggcctacgccagcctcttcagggagctggaggatacgctc
gctgacatgggcctgagcagcttcggagtctccgacacgtcactagaggagatattcctg
aaggtcacagcagatggagaagcagccagcaaagccaccactgcagaacagtggatgtta
caggggaggaacgccggcagcagagtggctgcaggagcagaagaagatcaaaacggcgtg
aacggcagcccgcctgcgtccgacagcagcgagggaagaggctccaggcaggtgaaggga
gcctccctggttctgacgcagttctacgctctgctggtgaagaggttccaccacgccgcc
agaagccagaaggacttcctggcacagatcgttcttcctgccacctttgtcctcgtctct
ctgatcttcaccttgattgttcctccgtttggagagtatcccagtctgactctgagcccg
tggatgtacggacagcagatgaccttcttcagcaatgagcgaccatttgaccccaaaatg
aagcatttcatagaacggctgttggcctggcccggttttgggacacggtgcatgcagggg
gagcctctggggatgacctgcaataacagcatatcggagtgggaggagcctattgttcca
cctgaggtcatgaagatcttccacagtcaggagtggtcccccaggaacccctcaccctcc
tgccagtgcagctccagcaagaagctgaccatgatgcccatctgtcctgctggtgctggg
gggcccccaccccgccaacgactggaggccacaggagacacccttctggacctgacagac
cggaacatctccgactacctgctcaagacctaccccagcctgatcagaaccagcctgaag
agcaaatactgggtgaacgagcaacgatacggaggtctctcagtaggaggacagctcccc
gtcctggacgtggaccccaaagacatccggagtgttttctaccagctggggaaaatcctc
aacatcaccgggggtcacttctgcgtcctaaccctgagggatgttgggactttcttacga
ttcatggagagtgagttcaatatcaaggtctggtacaacaacaaaggctggcacgccatg
gtggcctacatgaacgtggccaacaacgccatcctgcgggctttccttcctcccgcccac
agatccgaggagtttggcatcaccgccatcaaccatcctctgaacctcaccaaggagcag
ctctccgaggtcacggtgttgaccacttctgtggatgctgtggtggccatctgtgttatt
ttcgccatgtccttcatccctgccagctttgtcctctacctcatccaggagcgagtgacc
aaagccaagcacctgcagtttgtcagtggcgtcagccctctggtttactgggtggccaac
ttcttctgggacatgatgaattacactgtgagcaccgccatggtggtcggcatcttcatg
gcgtttgacaaaaagtgttacacgtcccagaagaacctgcctgctctggcggctctgctt
cttctgtacgggtggtcagtgacccccatgatgtaccccatgtcctacattttcagcatc
ccaagcacagcatacgtgtctctgtcctgcatcaacctctttgtcggcatcaacagcagc
gccatcaccttcattctggaactttttgagaacaatcggtctttgctgatgttcaatgag
tggctgaagaaatgcctcctggtgtttcctcacttctgtctgggccgaggcttgatagat
atggccatgaatcaggctgttaccgacgtttatgcccgcttcggagaggagttctcgttg
gaccctttccggtgggactttttggggaagaacctaactttcatggcagttgagggcttt
gtgtacttcctcctgaatcttctgatccagtacaggttcttctttgaccactggttgtca
gatcatcagcagtgtcccattcaggaggatgaggatgtggcggccgagaggaagaggatt
tatgatggaggcggcaagatggacatcctccagatcagagacctctccaagacgtatgtg
ggcaggaagaggccagcggtggaccgcatctgtgtgggggttcctgcaggggagtgtttc
ggtcttctgggagtcaacggagccggaaagacgacgaccttcaagatgctgacgggagac
acagacgtttcctctggagacgcctctgtggccggctacagcatcctcacacagatgctg
gacgttcaccagaacatgggctactgccctcagtttgacgccattgatgagctgctgacg
gggatggagcatctctacctttatgctcggctccggggggtcccagagtcggagatcccc
agggtggcagagtggggcatcagaaagctgggcctgacagagtacgccagccgctgtgca
ggaacgtacagcggaggctacaggcgcaagctctccaccgccatcgccatgatcggctgt
cccgctctggtgctgctggatgaacccaccaccgggatggacccccactcccgccgcttt
ctgtggaacgccatcatgagcgtcattcaggacggacgggccgtggtgctgacgtcacac
agcatggaagagtgtgaagctctgtgcacccggctcgccatcatggtcaacgggaccttc
aagtgtctgggaaccatccagcatctgaagtacaagtatggggacggctacgtagttacc
atgaagatcaaggcagccaaagcagggtggccccccgagctggagcccgtggagaccttc
atggagacctccttccccggctgcgtccagagggagaagcactacaacacgctgcagtac
cagatcgcctcgtcctcgctggcccggatcttccagctggtggtggtcaacaaggacagg
ctcagcatcgaggactactccgtgtcccagacaaccctggaccaggtgtttgtgaacttt
gccaagcagcagacggcagaggatgaagatgccctcagacgaacggtgaacgccaggaaa
gacaccaagatctccccagcaaagaggaaaagatga
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integrated database retrieval system
