Oryzias latipes (Japanese medaka): 101172621
Help
Entry
101172621 CDS
T02443
Symbol
apex1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101172621 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101172621 (apex1)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
101172621 (apex1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
101172621 (apex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
101172621
NCBI-ProteinID:
XP_004083030
UniProt:
A0A3P9IG23
H2MAE2
LinkDB
All DBs
Position
23:10827126..10831035
Genome browser
AA seq
311 aa
AA seq
DB search
MKRGKKTEEAAAADGENDSGSASAKKPKKTKEPEAPILYEDPPDKMTSKDGRSANMKITS
WNVDGLRAWVKKGGLDWVREEAPDVLCLQETKCAEKDLPAEITSMPEYPHKYWAVSDDKE
GYSGVAMLSKTEPLKVTYGIGKEEHDKEGRVITAEFPTFFLVTAYVPNASRGLVRLDYRK
TWDVDFQAYLTELDVQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEEREGFSQLLAA
GFVDSFRELYPEQANAYTFWTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAMGS
DHCPITLHLAV
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaggaaagaagacggaggaagcagcggcagcagacggggagaatgactccggc
tctgcttctgcaaagaaaccaaagaagactaaggaacccgaggcccccattctgtacgag
gacccacccgacaaaatgaccagcaaagatggccgcagcgccaacatgaagattacgtcg
tggaacgtggacgggctgagggcgtgggtgaagaaagggggcctggattgggtgcgtgag
gaggcccctgacgttttgtgcctccaggagacgaagtgcgcagagaaagacctccctgct
gaaattacctccatgccagagtacccacacaagtactgggctgtctcagatgataaggag
ggctacagcggggtggccatgctaagcaagaccgagccgctcaaagtcacctatggcatt
ggcaaagaggagcatgacaaagagggccgcgtcatcaccgccgagttccccaccttcttc
ctggtgacggcgtacgttcccaatgccagcagaggcctcgtccgcttggattaccgcaaa
acctgggacgtggactttcaagcttacctgactgagctggacgtacagaagcctttggtg
ctttgcggcgacctcaatgtagcccaccaggagatcgacctgaagaacccaaaagggaac
aagaagaacgcggggtttaccccagaggagcgcgaaggcttcagccagctgctggcggcc
ggcttcgtggacagcttccgcgagctctacccagagcaagccaacgcctacaccttctgg
acctacatgatgaactcccgcgccaagaacgtgggctggaggctcgactacttcctgctg
tcctcctcgctggtgccaggcctgtgcgacagcaagatccgcaacaaagccatgggcagc
gaccactgtcccatcacgctgcacctggctgtgtag
DBGET
integrated database retrieval system
