Oryzias latipes (Japanese medaka): 101172727
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Entry
101172727 CDS
T02443
Symbol
polr2j
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03020
RNA polymerase
ola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101172727 (polr2j)
09124 Replication and repair
03420 Nucleotide excision repair
101172727 (polr2j)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101172727 (polr2j)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101172727 (polr2j)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101172727 (polr2j)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101172727 (polr2j)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
SHNi-TPR
Motif
Other DBs
NCBI-GeneID:
101172727
NCBI-ProteinID:
XP_004068938
UniProt:
A0A3B3HFW8
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All DBs
Position
5:complement(18096232..18097467)
Genome browser
AA seq
141 aa
AA seq
DB search
MCVPSGSSISRLPVCSQRTESRGKMNAPPAFESFLLFEGEKKISISKDTKVPNACLFTLN
KEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLIS
ELSLLEERFRVAIKDKQEGIE
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgttccgagcggaagttctatatcaagacttccggtgtgttcccagcgcactgag
tcgcgcggaaagatgaacgcgcctcctgctttcgagtcattccttctatttgaaggagag
aaaaaaatcagcatcagtaaggacacgaaagtgccgaacgcatgtctgttcacgctcaat
aaggaggaccacacgctgggaaacatcatccgagctcagctgctgaaggatcctcaggtt
ttgtttgctggttataaggttccccatcccctggaacataaaatcgtcatccgagtgcag
accacccctgactacagtccacaggaagccttcacaaacgccatcactgacttgattagt
gagctgtcgctgctggaggaacgcttcagggtcgccatcaaagacaaacaagaaggcatt
gagtga
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