Oryzias latipes (Japanese medaka): 101172750
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Entry
101172750 CDS
T02443
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101172750 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101172750 (prpf8)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101172750 (prpf8)
Complex C
U5 SnRNP specific factors
101172750 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
101172750
NCBI-ProteinID:
XP_023817744
UniProt:
A0A3B3HJG4
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All DBs
Position
13:16914423..16929556
Genome browser
AA seq
2354 aa
AA seq
DB search
MAVNFPFRGVPPGMPPVVPPGVPPIVPPGVPPGVPPPVPVPDFMSEEKLQEKARKWQQLQ
AKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLK
LLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDSEEDASVVEWLYEHQPLKDNSKYVN
GTTYRRWQFTLPMMSTLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEP
LVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIK
TEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANG
IALLWAPRPFNLRSGRTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKH
RPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYN
FNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYI
FAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFM
RGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGI
KQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERI
RRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRR
FSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRI
KRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIK
PADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIV
DHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEM
AGSPQMPNDFLSFQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPN
NENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKD
NPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFH
NRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKI
GLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEE
DQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIGQNRRLTLEDLEDSWDRGIPRINT
LFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGV
EGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPT
INRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQEL
DALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYW
IDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPG
SKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVD
DTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKT
AEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEK
FGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTI
TEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQ
QRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAA
NLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKE
IRCIVMVPQWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMA
DNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQM
LLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQ
EGEIYNADREDMYG
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcaactttccattcagaggggtccctcctgggatgcccccagttgttccccct
ggtgtgcctccaattgtgccgccgggcgtacccccaggtgtcccccctcctgtgccagtt
ccggactttatgtctgaagagaaactacaagaaaaggcacggaaatggcaacagctacaa
gccaaacgctatgccgagaagaggaagtttggctttgtggatgcccagaaggaggacatg
cctcctgaacatgttcgcaagatcatcagggatcacggcgacatgaccaatagaaagttc
cggcatgacaaaagggtctaccttggtgctctcaagtatatgccccacgctgtgttgaag
ctgcttgaaaacatgccgatgccctgggaacagatccgagatgtgccggtgctgtaccac
atcactggagccatttcatttgtgaatgaaattccgtgggtcatagagccagtctacatt
gctcagtggggcaccatgtggatcatgatgcgtcgtgagaagcgcgatcggcggcacttc
aaaagaatgcgcttcccaccgttcgacgatgaggagcctccgctcgattatgctgacaac
attcttgacgtggaacccctggaagccatccagatggagcttgattctgaggaagatgcc
tcagttgttgagtggttatatgaacaccagcccctcaaagacaactccaaatatgtgaat
ggaaccacctaccgtcgatggcagttcacattgcccatgatgtcaacgctgtatcgtctg
gccaatcagcttctgacagacctggtggatttcaactatttttacctgtttgacctcaaa
gctttcttcacatccaaggctctaaatatggccattccagggggaccaaagttcgagccg
cttgtcagagacatcaacctccaggatgaggactggaatgagttcaatgacatcaacaaa
atcatcatcagacagccaataaggacagagtacaaaattgcattcccttacctgtacaac
aacttgccacaccacgtgcatctcacctggtaccataccccaaatgtggtgtttatcaaa
acggaggatccagatcttccagcgttctactttgatccgctgatcaaccccatttcccac
agacattctgtcaagagtcaggagcctctgcctgatgatgatgaagaatttgaacttcct
gagtttgtggagccgttcctcaaagagacccccctttacacagacaacacagccaatggc
attgctctgctttgggctcccagacctttcaaccttcgttctggccgcactcggcgtgcc
attgacatccctctcatcaagaactggtacagagagcattgtccagcaggacagcccgtg
aaggtgcgtgtatcatatcagaagctgctgaagtactacgtccttaacgctctcaaacac
agaccaccaaaggcacagaagaagagatatttgttccgttccttcaaagccaccaagttt
ttccagtctacaaagctggactgggtggaggtgggcctgcaggtgtgcagacagggctac
aacatgctcaatctccttatccaccgcaagaacctcaactacttgcatctggattacaac
ttcaacctgaagccagtcaagacactgaccacaaaggagcgaaagaagtcccggtttggg
aatgccttccacctgtgcagagaggtgctgcgcctcagtaaactggtggtggacagccat
gtgcagtacagattgggaaatgttgatgctttccagttgtctgatggactgcagtacatc
tttgcccatgttggacagctgaccggcatgtaccgctacaagtacaagctgatgagacaa
attaggatgtgcaaagacctgaagcatctcatctactatcggttcaacactggccccgtg
ggcaagggtcccggttgtggattttgggctcctggctggagggtttggctcttcttcatg
agaggcattactccactgttggagagatggctgggaaatctgttggccaggcagtttgaa
ggacgtcactcaaagggcgttgccaagactgttaccaagcagcgtgtggagtcccacttt
gacctggagttgcgtgctgcggtgatgcatgacatccttgacatgatgcccgagggcatc
aaacagaacaaggccagaaccatcctgcagcacctcagcgagtcctggagatgctggaaa
gcaaacattccctggaaggtgcccggtcttcctacgcccatcgagaatatgattctccgg
tacgtaaaggccaaagctgactggtggaccaacacggctcactacaaccgtgagcgaatt
cgcagaggagccactgtggacaagacggtgtgcaaaaagaacctgggccggctgacacgt
ctgtacctgaaagccgaacaggaacgacagcacaactacctgaaggatggcccttacatc
acagcagaagaagctgttgccatttacaccaccactgtgcactggctggagagccggcga
ttctcgcccattccgtttcccccactgtcgtacaaacatgacaccaagctgttgatcctg
gctctggaaaggctcaaagaggcctacagtgtgaaatctcgtctgaatcagagtcagagg
gaggaactcggcctgatcgaacaagcctatgacaaccctcatgaagctctgtccaggatc
aaacgtcacctgctcacccagagagcgttcaaagaggttggcattgagttcatggatttg
tacagccacctggtgccagtgtatgatgtggaacccctggagaaaatcacagatgcatac
ctggatcagtacctatggtacgaagcagacaagagacggctgttcccaccctggatcaaa
cctgctgatactgaaccacctccacttttggtttacaagtggtgccaaggcatcaacaac
ttgcaggatgtgtgggagactgcggagggagagtgcaacgtgatgctggagtcccgctac
gagaagatgtacgaaaaaatcgatttgactttgctgaacaggttactgcgccttattgtt
gaccacaacatcgctgattacatgacggccaagaacaacgttgtcataaactacaaagac
atgaaccacaccaactcttacggcatcatcagaggcctgcagtttgcttcgttcattgtg
cagtactacggcctggtgatggacctgctggtcctcggcctgcaccgtgccagtgagatg
gcgggctcccctcagatgcccaacgacttcctcagtttccaagacaccgcaacggagtct
gctcacccaatccgactgtactgccgttacatcgaccgcatacacatcttcttcaggttc
tctgctgatgaagccagagacctgattcagcgatatctgacggagcatccggaccccaac
aatgaaaacatagtggggtacaacaacaagaagtgctggccccgtgacgcccgcatgaga
cttatgaagcacgatgtaaaccttggacgtgcagtgttctgggacatcaagaaccgcctg
cccaggtctgtgaccacggtgcagtgggagaacagcttcgtgtccgtttacagcaaagac
aaccccaacctgctcttcaacatgtgtgggttcgagtgtcgcattcttcccaagtgtcgc
accagctatgaggaattcactcacaaggatggcgtctggaacctgcagaatgaggtaaca
aaagagaggactgcgcagtgtttcctccgagtggatgatgagtcaatgcagcgtttccac
aacagagtgcgtcagatcctgatggcttctggctccaccactttcaccaagattgtgaac
aagtggaacaccgctctcatcggcctcatgacgtacttccgcgaggctgtggtcaatact
caggagctgctggacctgctggtgaaatgtgagaacaaaatccagacacgtatcaagatt
ggcctcaactccaaaatgccgagccgcttccctcccgtggtcttttacacccccaaagag
ttgggtgggctgggcatgctgtccatgggtcatgtcctcatcccacagtcagacctgcgg
tggtctaagcagaccgacgtgggaatcacccacttcaggtctggaatgagccacgaagaa
gaccagctcattcctaacttgtatcgatacatccagccgtgggagagtgagttcatcgac
tctcagagagtttgggccgagtacgccctcaagagacaggaagccattggtcagaacaga
cgtctgactctggaggatttggaggactcctgggacagaggaattccccgcatcaacaca
cttttccagaaagacagacacactctggcttatgacaaaggttggagagtcaggacagat
ttcaagcagtatcaggttctgaagcagaatccattctggtggactcaccagaggcatgat
ggtaaactttggaacctgaacaactaccgcacagacatgatccaggctctgggtggtgtg
gagggcattctggagcacacactcttcaaaggcacttacttccccacatgggagggtctt
ttctgggaaaaagccagtgggtttgaggaatccatgaaatggaagaagctgaccaacgct
caaagatctggtctcaaccaaatccccaaccgtcgcttcaccctttggtggtcccccacc
atcaacagagccaacgtgtacgtgggtttccaagtgcagctggacttgacaggaatcttc
atgcacggaaagatccccacgctgaagatctccctcattcagatcttcagggctcacttg
tggcagaagattcacgagagtattgtcatggatctctgtcaagtgtttgatcaagagctg
gacgcgttggagatcgagactgtgcagaaggagaccatccaccccaggaagtcttacaaa
atgaactcgtcctgtgcggacatcctcctctttgcatcatacaagtggaatgtctctcgg
ccgtctctgcttgctgattcaaaagacgtgatggacagcaccaccacacagaaatactgg
attgacattcagttgcgatggggggactatgattctcatgacattgagcgctacgccagg
gccaagtttttggactacaccacagataacatgagcatctacccctcccccaccggcgtt
ctcattgccattgacctggcttacaacctccacagtgcttatggcaactggttccctgga
agcaagccgctgatccagcaggccatggccaagatcatgaaggccaaccctgctctgtat
gtgctcagagagcgcatccgcaaaggcctgcagctgtactcatctgagcccaccgagccc
tacctgtcctcgcagaactacggtgaactcttctccaaccagatcatctggtttgtggat
gacaccaatgtgtacagagtcaccatccacaagacctttgaggggaatttgaccacaaag
cccatcaatggagccattttcatcttcaaccctaggactggtcagctcttcctaaagatc
attcacacatctgtgtgggctggacagaagcgtctgggacagttggctaaatggaaaaca
gctgaagaagttgctgctctgatccgctccctccctgtggaggagcagcccaagcagatc
attgtcaccagaaagggcatgttggatcctctggaggtccacttgctcgacttccccaac
atcgtgatcaaaggttctgagctgcagctgccattccaggcctgtctgaaggtggagaag
tttggagacctgatcttgaaggctacagagcctcagatggtgctgttcaacctctacgac
gattggctgaagacaatctcctcttacacggccttctcccgacttatcctgatcctcaga
gcactccatgtcaacaacgaccgcgctaaagtcattctgaagcccgacaaaacgaccatc
actgagccccatcacatctggcccacactcactgatgaagagtggatcaaggtggaagtg
caactcaaagatctcatcttggctgattatggcaaaaagaacaatgtgaacgtggcttct
ctgacccagtctgagatccgtgacatcatcttgggtatggagatctctgctccatcacaa
cagcgccagcaaatcgctgagatcgagaagcagaccaaagagcagtcacagctcacagcc
acgcagactcgcactgtcaacaagcatggagatgaaataatcacctccaccacctcaaac
tatgagacccagaccttctcctccaaaactgagtggagagtccgggctatatctgctgca
aacctccatctccgaaccaaccacatctatgtgtcgtctgacgacatcaaggagactggt
tacacctacattctgcccaaaaatgttctcaagaagttcatctgcatctcagatctccga
gcgcagattgctggctacttgtatggcaccagcccaccagacaacccccaagtgaaggag
atccgatgcatcgtcatggtacctcagtggggaacccatcagactgtccaccttcccaac
cagctgcccggtcatgaatacctaaaggaaatggagcccctcgggtggatccacacacag
cctaacgagtcgcctcagttgtcccctcaagatgtgacgacccatgccaagatcatggcc
gacaacccgtcttgggatggagaaaagaccatcatcattacttgcagcttcacaccgggg
tcctgcacgcttacagcatacaagttaacacccagtggatatgagtggggtcgccagaac
acagacaaaggcaacaaccccaaaggttatctgccgtctcactatgaacgagtgcagatg
ctgctctctgaccgattcctgggcttcttcatggtgcctggccaagtgtcctggaactac
aacttcatgggtgtgcgccacgatccgaacatgaagtacgacctgcagctggctaacccc
aaagagttctaccacgaagtccatcgaccgtcacactttttaaactttgcctcgctgcag
gagggggagatctacaatgctgaccgggaggacatgtacggttga
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