Oryzias latipes (Japanese medaka): 101172813
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Entry
101172813 CDS
T02443
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101172813 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101172813 (exosc10)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101172813 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Lipase
Motif
Other DBs
NCBI-GeneID:
101172813
NCBI-ProteinID:
XP_011475247
UniProt:
H2LKA4
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All DBs
Position
7:9466956..9478540
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AA seq
891 aa
AA seq
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MSLSKSKDDSNREVLDSNSDTNEEDKNELCPGFKDVDAFVKHGFGVVLSATKASAGLPQP
GDEFDFYRSFPGFQEFCESQGDQILQCMSQIMQHHGCRSHVKDRNKLTAVEERFDLVVDS
NDVILERAGILLDEADGVNRNQKPVMPAGFQPPKIVVSSWNRKGSGSSSQSETFRLLHAK
NIARPQLKFKEKIDNSNTPFVPKIFIKPNAVKPLPSYFTNKQIRNERPEDLDVPAALADL
IHQQRTQEHVEDMFSHPYQYELDHLTVPDSLLSKPEPQMYKPIAETKLSFIDSLEDLVEL
NEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLELRSEMYILNEAFTDPT
IVKVFHGADSDIEWLQRDFGLYVVNLFDTHQGSRALHLARNSLDHLLRHFCNVDSDKRYQ
LADWRIRPLPDEMVQYARTDTHYLLYIYDCVRAQLLDSNHGQPGLLQSVWNKSKDISLTK
YMKPVFTEDSYLEVLRKQKRSFNTQQLTAFRLLFAWRDKLARQEDESTGYTLPIHMMIKI
SEELPKEPQGIIACCNPVPPLVRQQVNELHLLVQQAREMPLLKAEIAAQKKKGLTPVKKP
EVTLFGPHDTSRASESELPYFSPNEALVKQGRLFSENESKMDVDEQKMSGLLAPAKITLF
QEPEVHTEQNSLSVAQMKARRIIESFENPFRMYLPSTDVHVNKNAKFDPSSKIFEISKRW
KLQSIEQQQKELEAKQKAKEEAKQQAKKASEKRTKTKQSYQESLQNVATVRQQAAESAKS
AAKKRETPASEVGEVTPKPAKKLKAAKKTQKTETPSQTSFKPFDYSQSDLKVFAGTKSKD
NSQFDPNRQGQDFKKKKVPQGQKKHTSAGNRSMSYMAGKSERGFRHNWPKR
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgtctaaaagtaaagatgactcgaaccgagaagttttggacagcaactcggac
acaaacgaggaggataaaaatgagctatgtcccggttttaaagacgttgacgccttcgtt
aaacatggatttggtgtggtgttatcagccaccaaagcatctgcaggtttacctcagcct
ggagatgaatttgatttctatcgaagcttcccaggcttccaggagttttgtgaaagtcaa
ggagatcagattttgcagtgcatgagtcagattatgcagcaccatggctgcagatctcac
gtcaaagaccggaacaagctgacagctgtggaggagaggtttgacttggtcgtagactcc
aacgatgtcatccttgaaagagcggggattcttcttgatgaagctgacggggtgaaccgg
aatcagaagccagttatgcctgctgggttccagcctcccaaaattgttgtttccagctgg
aaccgcaagggttccggctccagcagtcaatccgagacgttccgacttctccatgccaag
aatatagctcggcctcaactgaaattcaaggaaaagatagataacagcaacacacctttt
gtgcccaagatcttcatcaagcccaatgcagtaaagcctcttccatcctattttaccaac
aagcaaatacgcaatgaaagaccagaggatcttgatgttcctgccgccctggccgactta
attcaccagcagagaactcaggaacatgttgaagacatgttttcacacccataccagtat
gaactggaccatctcactgttccagacagccttctgtccaaaccagagcctcaaatgtac
aaacctatagctgagacaaagttatcctttatcgactctctggaggatctcgtggagctg
aatgagaagctgtgtaaactgtctgaatttgcagtggatcttgagcatcattcctacagg
agttttctgggcctcacctgtctgatgcagatctccaccagagatgaggacttcataatt
gacacgctggagctccgcagtgagatgtacatcctgaatgaagcattcactgacccgact
attgtgaaggtgtttcatggagctgattctgacatcgagtggctccagagagattttggc
ttgtatgtggtcaacctgtttgacacgcatcagggaagccgagctctccacctggccagg
aattcacttgaccacttactcagacacttttgcaatgtggactcggacaaaagataccaa
ctggccgactggaggattcgccccctaccagatgagatggtgcagtacgcccgaacagac
acccactatctcctttatatctatgactgtgtgagggcacagctgttggactctaaccac
gggcagccgggcctcctgcagtctgtctggaacaaaagcaaagacatttcactgacgaaa
tacatgaagcccgtgttcacggaggattcatatttggaggttctgaggaagcagaaaagg
tcttttaacacccagcagctcactgcctttagactgctctttgcctggagggacaagctg
gccaggcaggaggatgaaagcaccggatacacgcttcccattcacatgatgattaaaata
tcagaggaactgcccaaggaacctcagggcatcattgcctgctgtaaccccgtacccccg
ctggtgaggcagcaagtcaatgagctacacctgctagtgcaacaagcccgagaaatgccc
ctcctgaaggctgagattgctgctcaaaaaaagaaaggcctgacacctgtgaaaaagccg
gaggtcacattgtttggcccgcatgatacatccagggcatctgagagtgaactgccatac
ttttcacctaacgaagcactggttaaacagggcagactcttctctgaaaatgagagcaaa
atggatgtggatgagcagaaaatgagtggcctcttagcgccagctaaaataaccctcttc
caggagcccgaggtacacactgagcaaaactccctctctgtagctcagatgaaggccaga
cgaatcattgagtcttttgaaaatccttttagaatgtatttaccttccaccgatgtgcat
gtcaacaagaatgccaagtttgacccatcctccaaaatatttgagatcagcaaaaggtgg
aaactgcagagcattgaacagcagcaaaaagagttagaggctaagcaaaaagccaaagag
gaagcaaagcaacaggcaaagaaagcctcagagaaaagaacgaagactaaacaaagctac
caggagtctcttcagaatgttgccactgtgcgtcagcaggcagcagaatctgcaaaaagt
gcggcgaagaaaagagaaacgcctgcaagtgaggttggagaggtgactcccaaaccagca
aagaaactgaaagcagccaaaaagacccagaagactgaaacaccttcacagaccagcttt
aagccctttgactacagtcagtctgacctcaaagtctttgctggtactaaatcaaaggac
aactcgcagtttgatccaaatcgacaaggccaggattttaagaaaaagaaggttcctcaa
ggacaaaagaagcacacctcagcaggaaacagaagcatgtcatacatggctggcaagtca
gaaagagggttccgacataactggcctaaaagatag
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