KEGG   Oryzias latipes (Japanese medaka): 101172828
Entry
101172828         CDS       T02443                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ola03041]
    101172828
Spliceosome [BR:ola03041]
 Complex B
  Other components
   Complex B specific factors
    101172828
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_BBS7 Beta-prop_WDR75_2nd LisH WD_LRWD1 Beta-prop_IP5PC_F TFIIIC_delta VPS8_N LisH_PAC1 PROPPIN zf_topless PA14 DUF7165 Beta-prop_IFT122_2nd LisH_WDR26
Other DBs
NCBI-GeneID: 101172828
NCBI-ProteinID: XP_004073655
UniProt: A0A3B3IF29 A0A3P9JA39
LinkDB
Position
10:28089215..28097811
AA seq 513 aa
MSIEVESADVIRLIMQYLKENNLHRTLASLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLCRHIKFGQKSHVECGRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDSSQLLSASFDQTIRIHGLKSGKTLKEFRGHTSFVNEATFTPD
GHHVISASSDGTVKLWNVKTTECSSTFKPLGTSAGTDITVNNVLLLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctatagaggtggaatctgcagacgtgatccgtctgatcatgcagtacttgaaggag
aacaatctgcaccggaccctcgcctccctgcaggaggagaccacggtgtctctgaacacg
gtggacagcatcgagagttttgtagcggacatcaacagcggacactgggataccgtcctg
caggccatccagtccctcaagctgccagataaaaccctgatcgacctctatgagcaggtc
gtgttggagctgatagagctgagagagctcggcgcggcgcgttccctcctcagacagacg
gaccccatgatcatgctgaagcagacccaaccggagagatacatccacctggagaacctg
ctggcccgctcctactttgatccccgagaggcgtatcctgacggcagcagtaaggagaag
cgccgggcggccattgctcaggcgttggccggagaagtgagcgtggtgcctccatcccgt
ctcatggctctgctgggacagtctctgaagtggcagcagcatcaggggctccttcctcct
ggaatgaccatcgacttgttcagaggaaaggctgctgtcaaagacgtggaggaggagcgt
tttcccactcagctctgccgccacatcaagtttggacagaagtctcacgtggagtgtggt
cggttctcccccgacggtcagtatctggtcaccggatccgtggacggcttcatcgaagtc
tggaacttcacaaccggaaagatcagaaaggatctgaagtatcaggctcaggataacttc
atgatgatggacgacgccgtgctgtgtatgggcttcagccgggacactgagatgttggcc
accggcgctcaggacgggaagattaaggtgtggaagatccagagtggccagtgcctgcgt
aggtttgagcgcgctcacagcaaaggcgtgacctgcgtgagtttctgtaaggacagcagc
cagctgctgagcgcctccttcgaccagaccatcaggatccacgggttgaagtctggcaaa
actctgaaggagtttcggggtcacacgtccttcgtcaacgaggccaccttcacgccggac
ggccatcacgtcatcagcgcctcgtctgacggcacggtgaagctgtggaacgtgaagacc
accgagtgcagcagcaccttcaaacctctgggcacgtccgccggcaccgacatcacggtc
aacaacgtcctcctgctgcccaagaacccggagcacttcgtggtttgtaaccgctccaac
acggtggtcatcatgaacatgcagggacagatcgtgaggagcttcagctccggaaagagg
gagggcggagacttcgtgtgctgcacgctgtcgccgcgcggcgagtggatctactgcgtg
ggcgaagactttgtgctttactgcttcagcacggtgacgggcaaactggagagaacgctc
acggtccacgaaaaggatgtgatcggcatcgcccaccacccccaccagaacctgatcggc
acgtacagcgaggacggcctgctgaagctctggaagccttga

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