Oryzias latipes (Japanese medaka): 101173371
Help
Entry
101173371 CDS
T02443
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ola01001
]
101173371 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ola04054
]
101173371 (ciita)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
101173371 (ciita)
Protein kinases [BR:
ola01001
]
Serine/threonine kinases: Other
TAF1 family
101173371 (ciita)
Pattern recognition receptors [BR:
ola04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
101173371 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
AAA_16
nSTAND3
LRR_14
nSTAND_NTPase5
NB-ARC
AAA_22
DUF815
TsaE
TniB
AAA
Motif
Other DBs
NCBI-GeneID:
101173371
NCBI-ProteinID:
XP_023813457
LinkDB
All DBs
Position
8:16843510..16871374
Genome browser
AA seq
1610 aa
AA seq
DB search
MALFAEVLGKVRLFLTWAPPADIQALLDGLVAEQIISEGYRQNLKLCRFNKGIPDKPGDR
EPNSLLSQGSTTLHLSRKEINGLMSGSSGDLENIKKSMSPLHMSQDFHSSNPKLMQELME
EKEKHLNSLNHVFYPTLANCQHSLRFSDEIQGLLSGDKLVLKPGNDSERDKKGNSENGEE
WLEQVEEAARRIAVPLWQNWHKGQNMLLSLIPCETTGCAISDSIVSDRERQHPFLDMEEE
TELEAACKPLDGIFNCTSLGIRDLCLSNTLQLGELYSSAAGRAAGLNIDTRELEEEDGTA
SPVEACQATETKDITENPWNLSQADRPTDAMDAQRRTKYALSESFCGDLLYLLKDFENTM
QENSYLHPGMKESLDCCRNEDNASLWSTDRAVFENIKSHQDAKMQEGDQDNFIQSDILPE
DLSEFLNDDFLVSFLDPNALDKAFSSINVDDISQQTETPCLSGVLEPNKPPGNSRKRKRQ
SCEKRTRTDKNNTTKKARATGQPKPQEPHAETPFPQRGDAESGSSPEDGGTDFADTPPKV
LRLYPPQAATPLPIQFIAIPDNSGYQLVQLPPPNSSVIRLPLPNTPTTPTYILVPVDSPP
CNHHIPPLSPVDGTVAPILLSSSPPGSLSDTASKATSPSCVSLRSPSHDRSPSKEPPQSP
RIPDISQRVKDYIQAAKFHMYQQSLEMEEGLSITFHYVDQHVSQREIYRSGKNTSKCSDK
EFAITGRTQRQKNLLQLNQIFESSNVGKSVRCILLLGNAGMGKTTLIKKLCLDWSRNSLP
QFDFVFLLDGKGLTLTEPIYSLQTLLFDLSSVAPCVDPNEVFAQVLADPKRVLLIFDGFN
ELRDYESLLQTQEKDCFTLLQKDSKTQTFTVRQLYSAIFQRLLLPGCTLLLSSRPRGAAS
QLLRRVDTLLEVCGFTSDSIESYIFHYFTDPALRASALDCLKSSSYLYHLCWNPGLCRLA
CMVLEQSRNSENLPRTLTELCHQVVSLKMQKHAKTPTVCGSTQTQTTTQSTQNSPTEHSK
TSQERIWRKTSPNKTRGRVSTVPRMQKSRKAKELGKQEHNKNGYNLSKDADESENKDLLL
QLSALAWEGVKSNSSTIPRDRSVPTEVKAFGLGLGVLWPQNLERRRRFSNGETDNRNEKE
RRVEGQSEKNGEDVSTADCKDLILAWTSPFLQSYLAAVHLSLSRIVSDRSFLQALPFQMG
TKWRRRPKREELELTQRIVVGLLFHKKKKLQLLHSHTETVFRNTLISRQGLVAKHLAGLS
YSDLGSAQVLELCHYVYEASVSQESSGRDPGGTKLATQLAENLPESLRFNGVPLSPPDVF
TIKNALLTGAAEGRSFCLDFENTGIQISGLRALVSLNNINSFRACIADVINLWEQLEQSG
EEELLQGAVSKFHIQPLKATQVCHIEHLEKLVNIHTNKRLSESSRLSDSILTDGVPAVKD
LHKLEFELGSEEGPLALPKLWNLLPGLHNLQHLDLEESKIEDQGAEKLASILHSLTSLEV
LNLSQNCIGDKGVKKLAHALKDLPKLHCLSLYSNDISDEGAESLAAVLPHMPSLTHLDLG
YNKLRDVGAQSLALSLRNCKKVKTLRMWNQCIPYRVLERLQRQDSRILSL
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtttgcagaggttctgggtaaagtcaggttgtttctgacctgggctccacct
gctgacatccaagctctactggatggtttggtggcggagcagatcatctcagaggggtac
agacaaaacctgaagctgtgccgatttaataaaggaattccagataaaccaggagatcga
gagccgaacagccttttatctcaaggatcaaccaccctgcacctcagccgaaaagagatc
aacgggttaatgtctggttcatctggagatttggagaacatcaaaaagtctatgagcccc
ctgcacatgagtcaggattttcacagcagcaatcccaaactgatgcaggaactaatggag
gagaaagaaaaacatctaaacagcctcaatcatgtcttctatccaactctggcgaactgc
caacacagtctcagattcagtgatgaaatacaaggactgctgagtggtgacaaattggtg
ctgaagcctggaaatgatagtgaaagagacaagaaagggaattcggagaatggtgaggag
tggttggagcaggtagaagaagctgcaaggaggatagctgtgcctctgtggcagaactgg
cacaaaggacaaaatatgttattgtctttgattccctgtgagacaaccggctgtgcaata
agtgacagtatagtgtcagaccgtgaaagacaacacccgttcttggacatggaggaagaa
acagagttggaagctgcctgcaaacctctcgatggcatatttaattgtacctcattggga
attagagatctgtgcttgagcaacacactacaacttggagagttatactcatctgcagct
ggccgtgcagcagggttgaacatcgataccagggagttggaggaagaagatggaactgcc
tcccctgttgaagcctgtcaagccactgaaacaaaggacattactgagaatccttggaac
ttgagtcaggctgacaggccaacagatgcaatggatgcacaacgaagaaccaaatatgcc
ctctcggaaagcttctgtggtgatctactttatttattgaaggactttgaaaacaccatg
caggaaaactcgtacttgcatcctggcatgaaagagagtcttgattgttgcaggaatgaa
gacaatgcatcattatggtccacagacagagcagtctttgagaatataaagtcacaccag
gatgccaagatgcaagaaggagatcaggataattttatccagtcagacattctcccagag
gatttgtcagaattcctaaatgacgactttttggtttccttcctggatccaaatgcactt
gataaagctttcagctcaatcaatgtggatgacatcagtcagcaaacagagaccccctgt
ctatccggcgttctcgagccgaacaaaccaccaggaaattcaagaaagagaaaaagacag
agttgtgaaaaaagaacccgcacagataagaacaacactacaaaaaaagcaagagcaaca
ggtcaaccaaaaccccaggagccacacgccgagacacctttcccccagaggggtgatgca
gaatctggatcatctccagaagacggcgggacagacttcgctgacactccaccaaaagtt
ctacgcctttacccaccgcaggctgccactccacttcccattcagttcattgctatccca
gacaattcaggttatcaactggtccagctgcctccacctaactcttcagtcattaggcta
ccactgccaaacactcccaccaccccaacgtacattttagttcctgttgactcgcctccc
tgcaatcaccacatacctccactgtccccagtggatggcactgtagcccctattctgttg
agttcatcccccccaggttctctatcagacacagccagcaaggctacatccccctcttgt
gtctcccttcgttctcccagtcatgataggtccccatcaaaggagccaccacaatccccc
agaattcctgacatttcccagagagtaaaggactatattcaagcagctaaatttcacatg
tatcaacagtccctggaaatggaggaaggcctgagcattacgtttcattacgtagaccag
catgtgagccaaagagagatttatcgctcaggaaaaaacacaagcaaatgttcggacaag
gagtttgccatcactggacgtacacaacgacagaaaaacttactgcagctgaatcaaatc
tttgaaagctcaaacgtaggaaaatctgtacgctgcattttgctactcggaaacgcagga
atgggaaagaccactttgatcaagaagttgtgtcttgactggtccaggaactccttacct
cagtttgactttgttttcctacttgacgggaaaggactcacgctaacagagcccatttac
agccttcagacgctcctttttgacctttcttccgtcgctccttgtgttgaccccaatgaa
gtgtttgctcaagttctcgcagaccctaaacgcgtcctcctcattttcgatggctttaat
gagctacgggactacgagagcctactccaaactcaggagaaagattgcttcactctattg
cagaaagacagcaagacgcagaccttcacagttaggcagctatactccgccatttttcag
aggctccttctcccaggatgcactctactcctttcaagccggccgagaggtgcagctagc
cagttactccgacgggtggatactcttctggaggtttgtggcttcacctcagacagtatt
gagtcttatatatttcattacttcaccgatcctgccttgagggcgtctgctcttgattgc
ttgaaaagtagcagctacctataccatctgtgctggaaccctggactctgccggttagca
tgcatggttttagagcaatccagaaactctgagaacctgccaagaactttgactgaacta
tgtcatcaagttgtctctctgaaaatgcaaaaacatgcaaagaccccaacagtatgcggt
agcactcagacacaaactactacacaatcgacacaaaacagtccaacagagcattcaaaa
acttctcaagaaaggatatggaggaaaacgtccccaaacaaaaccagaggaagagtgagc
acagtccctcgcatgcaaaaatccagaaaagctaaagagttaggcaaacaggaacacaat
aagaatgggtataatctgtccaaggatgcagatgaaagtgagaacaaagacttgctgctc
cagctgagtgctttggcgtgggagggggtcaaatccaactcctccacaatccccagggat
cgatccgtaccaactgaagtcaaagcttttggcttaggcttgggggttctctggcctcag
aacctagagaggaggagaaggttctcaaatggagaaacagacaacagaaatgagaaagag
agaagagtagaaggacagagcgagaaaaacggagaagacgtcagcactgctgattgtaaa
gatcttattctggcctggaccagcccttttcttcagagttacttggcggctgtccatttg
tctttgtcaaggattgtctcagaccgctcttttcttcaggccctccctttccaaatgggt
accaaatggcgccggcggccaaaaagagaggagcttgagctcactcagagaattgtggtt
ggactacttttccacaaaaagaaaaaacttcagctgctccactcacacacagagactgtc
ttcagaaatacgctgatcagcagacagggtttggtagcaaaacacctcgcaggcctttcc
tacagtgacctgggttctgcccaggtcctggagctgtgccactacgtctatgaagcaagt
gtttctcaggaaagcagtggcagagaccccgggggcacaaaactagccacccagctggca
gaaaaccttccagaatctctcaggtttaatggggttcctctcagtccacctgatgtgttt
accataaaaaacgctctgctgacgggagcggctgaaggcagaagtttctgcttggatttt
gaaaacactgggatacagatcagtggactcagagctctggtgagcctcaacaacatcaat
tcattcagggcgtgcatcgctgacgtcatcaacctctgggagcagctggagcaaagtggc
gaagaggagctcctgcagggagcagtgtcaaagtttcacatccaacctctgaaagccaca
caggtgtgtcacatagaacacctggagaaactggtgaacatccacacaaacaagaggcta
tcggaaagctctcgcctgtcggactccatcctgacagatggggtaccggcggtcaaagac
ttacacaagctggagtttgagcttggttcagaggagggccctctggctcttcctaagcta
tggaaccttctaccagggctgcataacctccaacacttggacctagaagaaagtaaaatt
gaggaccaaggagcagagaaactggcaagcatattacactcactcacctctctggaagta
ctaaatttgtcacagaattgcataggggacaaaggggtgaagaaactggcacatgcactg
aaggatctgcccaaactgcactgtttaagtctctacagtaatgatatttccgacgaaggg
gcagagagtttggcggctgtcctcccacacatgccgtccctcacacatcttgatctgggc
tacaacaagctgcgagatgttggagcgcagagtctggcactcagtctgagaaactgtaaa
aaggttaaaaccctgagaatgtggaaccagtgtatcccatatagagtgcttgagagactt
caacgccaggacagtcgcatcctttcgctatag
DBGET
integrated database retrieval system
