Oryzias latipes (Japanese medaka): 101173399
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Entry
101173399 CDS
T02443
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ola03021
]
101173399 (chd1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101173399 (chd1)
Transcription machinery [BR:
ola03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101173399 (chd1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
101173399 (chd1)
SLIK complex
101173399 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
CHDCT2
Motif
Other DBs
NCBI-GeneID:
101173399
NCBI-ProteinID:
XP_011480396
UniProt:
H2MI02
LinkDB
All DBs
Position
12:27564789..27585049
Genome browser
AA seq
1767 aa
AA seq
DB search
MAGRSEDESVSNSSGGSSNSDDDSGSRSGSASGSGSSSSSSSSSSQSDSSDSGSGSDSDS
QSDSETGVSNEKTEPQNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQRRASSNSGS
DEDSSSSDNSSSSSSRRRRHSGSSDSGSGSGSGSDSGSDSSAEDNSNETTSDYEPSHAFK
GRKPPNKVNSRNGKKSAVQRKKVQKRSSSDDEQDDYIKAASAGPRRQATVNVSYKEDEEL
KTDSDDLLEVLGEDVPQLEEEEFETIERVMDSRIGRKRATGSVTTVYAVEADGDPNANFN
PNKEAGDVQYLIKWKNWAHIHNTWETEETLKQQNVRGMKKLDNFKKKEQEQKKWLKMASP
EDVEYFNCQEELIDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGAL
IGKKFQKRIDDYMCRNQSKTIPSRDCKVLKQRPRFVPMKRQPSYIGGDGLELRDYQLDSL
NWMAHSWSKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTVTSWQREI
QLWAPQMNVVVYLGDISSRNMIRTHEWIHLHSRRLKFNILLTTYEILLKDKTFLGNVNWA
FIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPDKFHSWE
HFEADHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMTAVQKQYYKWI
LTRNYKALSKGTKGSTSGFLNVMMELKKCCNHCYLIKPPDDEFLSKVEALQLLIRSSGKL
VLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQALDHF
NAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIY
RLVTRGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLNTGAAPSSSAPFNKEELSAILK
FGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMDDE
EIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYMLPRMRNCAKQISFNSGERRHG
RSRRYSASDSDSLSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLERLDA
IARDAELVDKSELDLKRLAETVHNGCLRTLRENPCGPEKTSGGRRGKVKGPTFRISGVQV
NAKLVISHEEELAPLHKAIPADPEERKKYVLPCHSKAAHFDIEWGKEDDSSLLIGIYEYG
YGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEAQKQAVTA
NSRKRKPRNKKSKTQKAVKAEEVTRSPSSDPPSEKASDDEEEDADEEKETPLKSRRSRTD
KLLMDEEEEDEEEEEEEEDRDCSSSGERESREEIKKEEESCEIKDAKESKEKKDGKAVEV
IHKQEENDVKTEQRDRPKKASDTPVHVTAGENMAGCEESEELDQRTFSVCKERMRPVKAA
LKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTE
FDARKLHKLYKHAIKKRQESAQAAEQNTRTANTHSFKHADVERLKDGSHHDDSSRDSYSS
DRHPPAPRHHDGSGGGKERHAAEPHRKSSLPESRKRPYSYYSNGKDHRDHYRPDSRDRDR
YYSDGKHRKMEDLRSGRDHRLDLKDGSHSDHYSSQRYHSDWQAEQRASASGTRSPYDSRS
PMGHRSPFDYSSDHRSTPEQIWSSRKT
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtcagcaacagcagtggggggtccagtaactcg
gacgatgattccggttctcggtccggctcggcctccggttctggttccagttccagctcc
tccagcagcagcagccaatcagacagcagcgactcgggaagcggctctgattctgacagt
cagtcggactctgaaaccggggtgtccaatgagaagacagaaccgcagaacaagtcaaac
attgatggagcagagttctggaagtccaacccgagcatcctggcggtgcagagatctgcg
atgctccggaagcagcagcagcagcaacagcagcgacgagcctcctccaacagcgggtct
gatgaggactcttccagcagtgacaactcctcatccagcagctccagaaggagaagacat
tctggctcctcggattctggatcaggctcgggatcaggaagtgattctggatcagattcc
tcagcagaagacaacagtaatgaaaccacgtcggactatgagcccagtcatgcgttcaaa
ggcagaaaacctcccaacaaggtgaattcgcggaacggaaagaaaagcgccgtccagaga
aagaaggtccagaagcgctcgtcctctgacgacgagcaagacgactacatcaaggcggcg
tccgcgggcccccggcggcaggccactgtcaacgtcagctacaaggaggacgaggagctg
aagacggactctgacgatttgttggaagttctgggtgaagatgtacctcagctggaggag
gaagagtttgaaaccatcgagcgagtgatggacagcaggatagggagaaagagagctacg
ggcagcgtcaccacggtgtacgccgtggaagcagacggcgaccccaacgctaacttcaac
cccaacaaagaggccggtgatgtccagtatctgatcaagtggaagaactgggctcacatc
cacaacacgtgggagacggaggagacgctgaagcagcagaacgtcagaggcatgaagaag
ctggacaacttcaaaaagaaggagcaggagcaaaagaaatggctgaagatggcttcacca
gaagatgtggagtatttcaactgtcaggaggagctgatagacgacctgcactctcagtac
cagctggtggaacgaatcatcggacattcaaaccagaagtctgcagctggttacccggat
tacctgtgcaaatggcagggcctgccgtactcggagtgcagctgggaggacggcgccctg
attgggaagaagtttcagaaacgtatcgacgactacatgtgcagaaaccagtccaagacc
attccctccagagactgcaaggttctgaagcagaggcccaggtttgtgccaatgaagagg
cagccatcttacatcgggggggacggtctggagctcagagactaccagctggacagttta
aactggatggctcactcatggagcaaggggaacagctgcatcctggcagacgagatgggt
ttggggaagaccatccagacaatcagcttcctcaactacctgttccacgagcaccagctc
tacggacccttcctgctggtggtgccgctctccaccgtcacgtcctggcagagggagatc
cagctgtgggcgccgcagatgaacgtcgtcgtctacctcggagacatcagcagcaggaac
atgatccgaacgcacgagtggatccacctccacagcaggaggctcaagttcaacatcctc
ctcacgacctatgagatcctcctcaaggacaagacatttctgggcaacgttaactgggcc
tttatcggcgtagacgaggcgcaccggctgaagaacgacgactcgcttctgtacaagaca
atgatcgacttcaagtccaaccaccggcttctgatcaccgggacgccgctgcagaactcc
ttgaaggagctgtggtccttgctgcacttcatcatgccagacaagtttcactcctgggag
cattttgaggccgaccacgggaagggcagggactccggctacaccagccttcacaaagag
ctggagcccttcctgctgcgccgcgtcaagaaggacgtggagaagtccctgccagcaaag
gtggagcagatcctccgagtggagatgactgccgtccagaaacagtattacaaatggatc
ctgaccaggaactacaaggctctgagcaaaggcaccaaaggcagcacgtcgggcttcctg
aacgtcatgatggagctgaagaagtgctgcaaccactgctacctcatcaagcctccagat
gacgagttcctgagcaaggtggaggctttacagctcctgatccgcagtagtgggaagttg
gttcttctggacaagttgctggtgcgcctgaaggagagaggccaccgagtcctgatcttc
tcccagatggttcggatgctcgacatcctggctgattacctgcggagtcggcagttcctc
ttccagaggttagacggctccatcaaaggggaaatgcggaagcaggcgctggaccacttt
aatgcagagggatcagaggacttctgcttcctgttatccacgcgcgccggcggtctggga
atcaatctggcgtccgctgacacggtggtcatcttcgactcagactggaaccctcagaac
gacctgcaggctcaggccagggctcaccggattggccagaagagacaggtgaacatctac
cgcctcgtgaccagaggctccgtggaggaggacattatcgagcgggccaagaagaagatg
gttctggaccacctggtcattcagagaatggacaccacaggaaagactgtcctcaacacc
ggcgccgccccttccagttcagcaccgttcaacaaggaggagctgtccgccatcctgaag
tttggtgcagaggagctcttcaaagagccggagggggaagaacaggagcctcaggaaatg
gacattgatgagatcctgaagagagctgagacccgggagaacgacccggggccgtccacg
gtgggggaggagctgctgtcccaattcaaggtggcaaatttctccatgatggacgatgag
gagatcgacatcgactcagagcgaagtcagcgcagctgggacgacatcattcccgaggag
cagcggcggaggatggaggaggaggagaggcagaaggagctggaagagatctacatgttg
ccccgcatgaggaactgtgccaaacagatcagctttaactcgggtgagcgccggcacgga
cggagcaggaggtactccgcctccgacagcgactccctctcagaccgaaagaggccaaag
aagcggggtcggcctcgcaccatcccgcgagaaaacatcaaaggtttcagcgacgcagag
atccgcaggtttgtcaagagctacaaaaagttcggagggcctttggagaggctggacgcc
atcgctcgagacgcagaactggtcgataaatccgaactcgacctgaaacggttagcagag
acggtccacaacggatgcctgaggacgctgcgggaaaacccctgtggacctgagaagacc
tcaggggggagaagagggaaggtgaagggccccaccttcaggatctctggagtccaggtc
aacgctaagctggtcatttcccacgaggaggagctggctccgctccacaaagccattcct
gctgatcccgaggagagaaagaagtacgtgctgccctgccactcgaaggcggcccacttt
gacatcgagtgggggaaggaggacgactccagcctcctcatcggaatctacgagtacgga
tacggcagctgggagatgataaagatggaccccgacctcaacctcacacacaaactgctt
ccagatgatccagacaagaagcctcaggccaagcagctgcagacccgagcagactacctc
atcaaactactgagcaaggacctggccaggaaggaggcgcagaagcaggcggtgacggcc
aattcacgcaagaggaaaccacggaacaagaagagcaaaactcagaaggcagtgaaggcg
gaggaggtgactaggagcccgtcctcagaccccccctcagagaaggcgtccgatgatgag
gaggaggatgcagatgaagagaaggagacgccgctgaagagccgaaggagccgaactgat
aagctgctgatggatgaagaggaggaggacgaggaggaggaggaggaggaagaggaccgg
gactgttcttcatcaggggagagagaaagcagagaggagataaagaaggaggaggaaagc
tgtgaaatcaaagacgcaaaggagtcgaaggagaaaaaagacggcaaagctgtggaggtg
attcacaagcaggaggagaatgacgtgaagacggagcagcgagatcgacctaagaaagcc
tccgacacccccgtgcacgtgacggctggggagaacatggcgggctgtgaggagtctgag
gagctggaccagaggaccttcagcgtgtgtaaggagaggatgcggccggtgaaggcggcg
ctgaagcagctggaccgtccggagaagggcctctctgagcgcgagcagctggagcacacc
cggcagtgcctgatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaac
cccgagcagatcaagcagtggaggaagaacttgtggatttttgtttccaagttcacagag
ttcgatgccagaaagctgcataaactgtataagcacgccatcaagaagaggcaggagagc
gcgcaggcggctgagcagaacactagaactgcaaacacccacagcttcaagcacgcagac
gtggagaggctgaaggacggctcgcaccacgacgacagcagcagggacagctacagctcg
gacaggcacccgccggcgccacgccaccacgacggcagcggcggcggcaaagagcgacac
gccgccgagccccacaggaagagctcgctcccagagtccaggaaaaggccgtactcctac
tacagcaacggcaaagaccaccgagaccactacagaccagacagcagggacagagacagg
tattacagtgacggcaaacacaggaagatggaggacctgcgctccggcagagaccaccgg
ctggacctgaaggacggctcccactcggaccactactcctcgcagcgctaccactcggac
tggcaggcggagcagcgggcctcggcgagcgggacccgctctccctatgactcccgctct
cccatgggccaccgctcgccgttcgactactcgtcggaccaccggagcacgccggagcag
atctggagcagccgcaagacatag
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integrated database retrieval system
