Oryzias latipes (Japanese medaka): 101173482
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Entry
101173482 CDS
T02443
Symbol
trim23
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23 isoform X1
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101173482 (trim23)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
ola04031
]
101173482 (trim23)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101173482 (trim23)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101173482 (trim23)
GTP-binding proteins [BR:
ola04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
101173482 (trim23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-B_box
zf-RING_5
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
101173482
NCBI-ProteinID:
XP_004074544
UniProt:
A0A3B3HRD4
LinkDB
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Position
12:complement(3052897..3061422)
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AA seq
578 aa
AA seq
DB search
MAAAGINKQGTVVTMEPCFRHGRGANGSTVKVLECGVCEDVFSLQGDKVPRLLLCGHTVC
HDCLTRLPLHGRAVRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGATNQSGMSEDA
LKGMGECIIRCDEDESHTASVYCTVCATHLCGECSQLTHSTRTLAKHRRVPLADKPHEKM
LCPQHQVHAIEFVCLEEACQSGPLMCCVCKEYGKHQGHKHALLESEANQIRASILDMAHC
IRSFTDEVSEYSRKLVGIVQQIEGGEQIVEDGVGMAHTEHIPGTAESARSCVRAYFSDLH
ETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACLHCEKTLQQDDCRVVLA
KQEISCLLETLQKQQHQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDGAG
KTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVV
FVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGAVSVEEMTELLSLHKLC
CGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcgggaataaacaagcagggcaccgtggtgacgatggagccctgctttcga
cacgggaggggggcgaacggaagcaccgttaaggtgctggagtgcggagtttgtgaggac
gtcttctccctccaaggcgacaaggtcccccgcctgctgctctgcggtcacacggtgtgc
cacgactgcctgacccggctgcccctgcacggcagggcggtccgctgcccctttgacaga
caggtcacggagctgggagattcgggggtttggggcctaaagaagaactttgcgctgctc
gaactcctggagcgactccagaatggagccaccaaccagtcaggaatgtctgaggacgcc
ctgaagggcatgggagaatgtataatacggtgtgacgaagacgagagccacacagcctcc
gtgtactgcaccgtgtgcgccacccacctgtgtggcgagtgctcccagctcacccactcc
actcgcacgctggccaaacaccgccgcgtgccgctggccgataagcctcacgagaagatg
ctctgcccccagcatcaggtccatgctatcgagtttgtgtgcctggaggaggcgtgtcag
tccgggcctctcatgtgctgcgtctgcaaggagtatggcaagcaccagggacataagcac
gctctccttgagtctgaggccaatcagatccgagcttctatcctggacatggcccactgc
atccgcagcttcacagacgaagtgtccgagtactccaggaagctggtgggcatcgtgcag
cagatagaaggaggagaacagatcgtggaggatggcgtaggcatggcgcacaccgagcat
attcccggcacagcagagagcgcgcgctcctgcgtccgggcttacttctcagacctccac
gagactctgtgtcggcaggaggagatggcgctgagtgtggtggacgcccacgttcgggag
aggctcatctggctgaggcagcagcaggaggacatgaccatcctgctgtcgcaggtctcc
accgcctgcctgcactgcgagaagactcttcagcaggacgactgcagggttgttctggca
aagcaggagatcagctgtttactggagacgcttcagaagcagcagcaccagttcacggag
ctggcagaccacatccagctggacgccggcatccccgtcaccttcaccaaggacaaccga
gttcacatcggaccaaagatggagatccgggtggtgactctggggctcgatggggctgga
aaaacaaccattctattcaagctgaagcaagacgagttcatgcagcccatcccaaccatc
ggcttcaacgtggagaccgtcgagtacaagaacttaaaatttaccatctgggacgttggt
ggaaagcataagctgaggccgctctggaaacactattatctcaacactcaagcggtggtg
ttcgtcatcgacagctgccacagggaccgactcatggaggcccacagcgagctggccaaa
ctcctgacagagaaggagctgcgggacgcccttctgctcatcttcgccaacaagcaggac
gttccaggcgccgtgtctgtggaggagatgacggagctgctgagccttcacaagctgtgc
tgtgggaggagctggcacattcagggctgcgacgcccgtagtgggatgggcctccacgag
gggctggactggctctccaggcagctggtggctgctggggttctggacgtggcgtga
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integrated database retrieval system
