Oryzias latipes (Japanese medaka): 101173741
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Entry
101173741 CDS
T02443
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101173741 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101173741 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101173741 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
ola03029
]
101173741 (rb1cc1)
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101173741 (rb1cc1)
Membrane trafficking [BR:
ola04131
]
Autophagy
Autophagosome formation proteins
ULK complex
101173741 (rb1cc1)
Mitochondrial biogenesis [BR:
ola03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
101173741 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
ubiquitin
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
101173741
NCBI-ProteinID:
XP_011485300
UniProt:
A0A3B3HFP5
LinkDB
All DBs
Position
17:complement(27457087..27474796)
Genome browser
AA seq
1592 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVHQLKHAIQAKYKIAIQHQVLVVNGGECMAVDRRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVANKLCSFCERLVHDEHLQHQGWAAIMANLDDCTQSYQRLLSKFNISYTNYQH
DLEEIKVKLSKLGTAVSVMARIPLLECLTRHSYKESMEKSGSSPGKDSDETEEEKSTDSV
RFTAQAQIPHMSPSAPSASGSAADELHGEQETNEMADSGELKAALLDDSTPELTNQPLFN
VTLLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLADCCETIAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDAEKLQALLRLLTELMERVRV
VEALSTVPQMYCLAVVEVVRRKMFMRHYRAWANALVKDGKRLYEAEKFKRESFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRRPRRFDDELPDISLDDLQYLKSCCPDEVQPFLMVPSMCD
LEPLNRHVEKLHQLVQAAQSVDEMSQTITDLLSEQRASCTQSAQRSSVLSENTPTSPKTP
PSLSLQGTSCQPLHVPIPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGSLDLDSLAE
SPESDFMSAVNEFVIEENLASPNPISEPISPEMMVESLYSSVINAIDNKRMQDTTTLQRE
ASKISELKDVLEKYQCAAEESVCKFRVVKDDLRHLKSLVLKERSDFTLAINSLTTEVSSA
VGGVYQTHEMQLREQHRGELLNLRQELEKQIHSLAEENQVNQNIVRDVQRAMLELEGLLE
RKEKELTQLENEKERWLEKEGHLNERIKNLEQIISEQAEEIRMLSTLRDSLSSQLENLHF
EIERSQQKIRQEMEAASRCHLKELEDRLKEEHRTELETMSKDNKEALEHLAAENDAKSMT
SANHHAAALQEKDAQIKDLEARLTELAELRCKLEVELALKESESEEARIHFEETKTQQAD
AMKTQVEAETKTIREELAGLRKQLQAKNEEYEVDLAELRALMRIEKDHCISELVDRHEEE
TTLLHSNLSSLKQKLQDAKGSHAEQQQRLTDEFSQQIAELTEEKEQQCKSFQALEQELRT
LIGNLRSENDHLSKALKQEDSRKEEASNAAAADGFKELEQQKEEMERRLLDKIQQLEQEL
SEKKFSKSEEGLSLHAESGADSGGPLSLDSALQERLQQERASLQIQMELLEKKKNEEMQN
LKTSLIAEQQTNFNTVLTREKMKKEQIISDLTEKLHKVTQQQEKDKALIETLSEDRASVM
QEKKHLEEELNRLRSTVLASSSMFTSAEAGAAAARALPVAETLADTSVGAMQDDEHVDSA
VEASMVTVQDSILSEEKQRIILLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIR
DFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVLEK
EYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaagtgaacaacggcagcacgttgacatttgacactgacctt
gctgtccagactgtacatcagctgaaacatgccatccaagccaaatataaaattgcaatt
cagcatcaagtccttgttgtcaacggaggggaatgtatggctgtggacagacgggtctgc
agctacagtgctggcactgaaaccaatcccatattcctgttcaacaaagagatgatcttg
tctgatcgggatccaaccatccccaaaaccaccttctccatcgagagtgagattcaggtc
aaggtggaagaatctctactgatgccagctgtctttcacactgttgcctcaagaacacaa
cttgccctggaaatgtttgaagttgccaacaagctttgctctttctgtgaacgtttggtt
cacgatgaacatctccaacatcaaggctgggctgcaatcatggccaacctggatgattgc
actcagtcgtaccagaggttactcagcaaattcaacatttcatacaccaattatcagcac
gacctggaggaaattaaagtcaaactttcaaagttggggacagccgtctcagtgatggcc
aggatacccctgctggaatgtttgactcggcacagttacaaagagagcatggagaagtcc
ggttcaagccccgggaaggattcagacgaaacagaggaagaaaaatccaccgactctgtg
cgtttcactgctcaagcccagataccccacatgtcaccatctgccccgtctgcctctgga
tcggctgcagacgagctgcacggagagcaggagacaaatgaaatggcagacagcggtgag
ctgaaagccgctctgctagatgacagcactcctgagctcaccaaccagcctttgttcaac
gttacgctactggactggatcaatgtccaggatcggcccaatgatgtcgaagcagttgtg
aggaagtgctttgactccatcaacaggctggacccgcgcatcattcaacccttcctggca
gattgctgtgaaacaattgcaaagttagataatcagaacatgaaagccatcaaagggctt
gaggaccgattgtatgctctagatcagatgattgcgagctgcaagaagctggtgaatgag
cagaaggaacttgctcagggatttttggcaaatcagaagcgagccgaaaacctgaaggac
acgtccgttctgcctgacttgtgtctgagtcacaccaaccagctgatgatcatgctaaac
aaccacaggaagctgctggacattaagaagaagtgcaccaccgccaaacaagaactggca
aacaaccttcaagtcagactcaaatggtgctgctatgtgatgcttcatgccgaccaggat
gcagaaaagcttcaggcgcttctgcggctcctgacggagctgatggagagagtgagggtg
gtggaggccctcagcaccgtgcctcagatgtactgcctggccgtcgtggaagtcgtcagg
agaaaaatgtttatgcgtcactacagagcgtgggccaatgctctcgtgaaggatggaaaa
cgcctgtatgaggcagaaaagttcaaaagggaatccttcgggaaactcttcagaaagtct
ttcctccgaaatcggctgtttcgagggttggactcgtggcccccgacatcattctgtacc
cgaaggcccagaaggtttgatgatgaactcccagacatctcacttgatgacctgcagtac
ttgaagtcatgttgtcctgacgaggtgcagcctttcctaatggtgcccagcatgtgtgat
ttggagcccttaaatcgccacgtagagaaacttcatcagcttgtccaggctgctcaaagt
gtagacgagatgtcccaaactatcactgacctgctaagtgaacaaagggcatcatgtact
cagagcgcccagagatccagtgtgctgtctgaaaacacgccaacgtctcctaaaaccccc
ccctctctaagccttcagggaaccagctgccagcctcttcacgtccccatccccgccccc
ttggaggacttatcccccgacagcatcgacgcgcagacgtttgactttgaaaccatcggg
cacccgaacatggatccggtcctgcagcagggatcgctggacttggactctctagcggag
agccccgaatcggatttcatgtcagctgtcaacgagtttgtgatcgaagagaacttggcc
tctccgaaccccatcagtgagccgatcagcccagaaatgatggtggagtctctgtactcg
tctgtcataaatgctatagacaacaagcgaatgcaggacaccactacgctacagagagaa
gcctccaagatctctgaactcaaagacgttctggagaaatatcagtgtgctgccgaggag
tccgtctgcaagttcagggtcgtgaaggatgatctcaggcatttaaagagtctagtattg
aaggaacggagcgacttcacgttagccatcaacagcttaaccacagaagtgagcagcgct
gtgggcggcgtctaccagacccacgaaatgcagctgagagagcagcatcgtggagagctt
ctgaacctcaggcaggagctggagaagcagattcacagcctggcggaggaaaaccaagtc
aaccagaatatagtgcgagacgtccaacgcgccatgctggagctggaggggctgctggag
cgcaaggagaaggagctgacgcagctggagaacgagaaggagcgctggttggagaaggag
ggccatctgaacgaaaggatcaaaaacctggagcagatcatcagtgagcaggccgaagag
atcaggatgctctcaaccttgagggactctttgagcagtcagctggagaacctgcacttt
gagattgaacgcagtcagcagaagattcgccaggagatggaagctgccagtcggtgccat
ttgaaggagctggaggaccgattgaaggaggagcacaggacggagctggaaaccatgagc
aaggataacaaggaagccctggaacaccttgctgctgaaaatgacgcaaagtcgatgact
tcagccaatcaccatgctgctgctctccaggagaaggatgctcagatcaaggatttggaa
gctcggcttacggaactcgcagagctgcgctgcaagttagaggtggaactagccttaaag
gagtccgaatcggaggaggcgaggatccactttgaggagacgaagacgcagcaggcagat
gccatgaagacccaagtggaagccgagaccaaaaccatcagagaagagctggcaggactc
cgaaagcaactgcaagctaagaacgaggagtatgaagtggacctagcagagctgagagcc
ctcatgagaattgagaaggaccactgcatctcagagctggtggacagacacgaagaggag
acgactctgttgcacagcaacctctcctccctgaagcaaaagctccaggacgccaaaggg
agccacgccgagcagcagcagagactcacagacgagttcagtcagcagatcgctgagcta
acggaggaaaaagagcagcagtgtaagagtttccaagcgttggagcaggagttgaggact
cttattggcaatttacggtcagaaaacgaccatctttcaaaagcattaaagcaggaagat
tcaaggaaagaggaggcctcaaatgctgcagcagcagacggctttaaagagctggagcag
cagaaggaggagatggagaggagacttttagacaaaattcaacagctggaacaagagctt
tccgaaaagaagttctcaaaaagtgaggaaggtttgtcgcttcacgccgagagtggagcg
gattctggaggaccgctgtcgctggactctgccctacaagagcgcctgcagcaggagcgg
gcgtccttacagatccagatggaactcctcgaaaagaagaagaacgaagagatgcagaac
ctcaagacctcgctgattgcagagcagcagacaaacttcaacactgtgctaacccgagaa
aagatgaagaaggagcagatcatcagtgacctcacagaaaagctgcacaaagtgactcag
cagcaggagaaggacaaagctttgatagaaacgttgtctgaggaccgggcaagtgtgatg
caggagaagaagcacttggaggaggagctgaaccgcctgcgcagcaccgtcctggcctcc
tccagcatgttcacctccgcagaggccggagcggcggcagcacgagctctgcccgtcgcc
gagactctggctgacacgtctgtgggcgccatgcaggacgacgagcacgtcgattccgcc
gtggaggccagcatggtgaccgtccaggacagcatcctgtcggaggagaagcagcgcatc
atcttactcgagaggaccttacatatgaaggaagaagaaaacaagcgcctcagtcaaaga
ctcatgtctcagagcatgtcgtccgtgtcgtcacggcattcagacaaaatcgcaatcaga
gatttccaggttggcgatttggttctcatcattctggacgaacggcacgacaactacgtg
ctcttcaccgtcggccccaccctctacttcctccactcggagtctctcactgctctggac
ctcaaaccagcttcagggacttctaggcggccgtgggttcttggaaaagttctggagaag
gagtattgccaagcaaaaaaggcccagaacagatttaaggttcctctgggaaccaagttt
tacagagtgaaagctgttccatggaacagaaaagtataa
DBGET
integrated database retrieval system
