Oryzias latipes (Japanese medaka): 101173885
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Entry
101173885 CDS
T02443
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ola03016
]
101173885 (tarbp1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101173885 (tarbp1)
Enzymes [BR:
ola01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
101173885 (tarbp1)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
101173885 (tarbp1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101173885 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
101173885
NCBI-ProteinID:
XP_023819046
LinkDB
All DBs
Position
15:25194313..25207199
Genome browser
AA seq
1613 aa
AA seq
DB search
MMHSVLINAVLRSSSEYEVLLGSLLWPSETWPETERVEALTALIEGLGALLARSDPQPVT
DATRQSITAEIESVIWTRCMPLLSKISAEPEDAGCRESTTAVCRLLRVCVAQCSEDARTR
AAQFILPSLQPQEEEGEISHGRFSVEVASESMASLIPFLSADDHLTQAILSAALSSIRSL
PDASVPRIIVRIISTLLRFCSGARSDSILRSILEHVCGWHSSETSTLVTERSLLCLTALS
DHLLQPRSPQSHSSDAPDPRLYLQFWRIVQDGLTHRDSLARKRALYLLKRCAALSEEEAL
DVPSSASEEDEMLFRWAPDRVEVLRKFWEDYVLVMETLEENQIHVVRPVLNRIDTLIETT
VNGCQGSDWGLFHPSWLLCVYHRMFQSENKSLTKEGVCHLVELRVLQHPAFALCFSQFIV
GPFMDVLSETSLFHRSPGERVGECPELAVKLRVFMETFFTSLPQEERCAVLLQLIQQLST
KHWSAVPLLFVCESLSQLPLQPLLGISGLATIREVLRCTMITHQVLLRGAAQCFLLKSAL
SLTVVSEVTLDDVFSFLACFRADESLCRGTKLWNQVWAWLLKHEDSFKSRTIDRDLDAPP
RKKETVKTHVQETLLAFLMVPACMGHNERLPDSREADKLARAVLLCAEMQRSRAGAGLIS
FLDSLLSPLLDTLSRVSTNMYQPLSKSDKSLQLLLRLFQLVAINQRVRVEEDDVLVAIRG
ILFRLFDPVLEFILRQLCGGLQELCDVERADLYLCVLRQLVVVCRSSSQHHNKIHQIVFP
KLIKFGLTALKNQTHRVPLVADQVAMAVAMASLATVCDLTAQEGTDNQSETSSALKSLND
YFFSPTSSQHPTCLGHINQRLVKPQLIDSSGCNLEAQGILQQDWGLIAARFMRDQWICLN
FLFKTFGIPASTADALRAAFLCGLEALTLLPSDLVLPVLTFNEMVLPQLVCGEEALCVQA
VTCSWELVQGLSTNAHDFWPALRGFVSMAFQHSLLILPKDQAPDLTVTLKQIASELLELS
QTKSGVYGVLTQHCCQTWLDTDAGFTSVFSYLDIVTEACVYGPLMRKDQRLIQDVHTYVE
QLGESCAANVAVTSGTRDDQLPRICVLAFLSRLDSTNVLHQRLIEELVFELLKKDTEISK
SKTRYHSNSLQHRVKNRVWQTLLMLMPKLKEEFVGALLSRVFEAGFGSNHASVKYLIEWM
MILILVRCPQHIESLWICFSKTHEHTKTSICTFLSVLVHFNVIVPHLKDKDVQLRKALDV
TLQSCLSHNFSVRLYALLALKRVWHLAENMAEEAEALRSLSSVVGVCLTQAEAMQSTGNA
SKNWIRIQEHFFFSCFHPIRDFSIETIFYTFPSLSELTDDEWIPPWKFERFAGFAESSAF
PLRNAVRDLEQVQPGDWIQQDSSEQGKEERWVEVQKKITPSRLGIQEQEPELQLIPPQRA
ARLGKQPGALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRHVTDKHFQSLSVSSEL
WLPLLEVKPMELTEFLQMKKSEGYCIVGVEQTANSQSLQDYRFPEKTLLLLGNEREGIPA
NLLQMLDVCVEIPQQGVIRSLNVHVSAALLIWEYTRQRLTSNSVEVANKHEFV
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgatgcattcggttcttattaacgcggttttacggagctcttcggaatacgaggttttg
ctgggatctctgctgtggcccagtgagacgtggccggagacggagcgagtggaagcgctg
acagctctcatcgaaggactcggagcacttttagcccgctcagatccacagccggtcaca
gatgcaacaaggcagagtattactgctgaaatcgaatcggtgatttggaccaggtgcatg
cctctcctgtccaaaatctcagcagaaccagaagatgcgggctgcagggagagcaccacc
gctgtttgcagacttttgcgtgtttgcgtcgcgcagtgcagcgaggatgcgcggacgcga
gcggctcagttcatccttccatccctgcagccacaagaggaggagggggagatctcccat
gggcgtttcagcgtggaggtggcctctgagagcatggcatccctcatcccttttctgtca
gctgatgatcacctcacacaagccatcctgtctgctgccctgtcctccatcagatccctc
ccggacgcatctgtccccagaatcattgtgcggatcatctcaacccttctgaggttctgc
agcggtgcacggtcagactccatcctcaggtccatcctggagcacgtgtgcggctggcat
tcctcagagacctcaactctggtgacagagaggtctctactgtgtttgaccgccctgtca
gaccacctcctccaaccacgcagcccccagtcccacagctcagatgcacccgaccctcgc
ttgtaccttcagttctggaggattgttcaggatggactgactcacagagacagcctggcc
cgtaagagggctctgtatcttctgaagagatgtgcagctctgtctgaagaggaggcctta
gatgttccgtcttctgcatcagaagaagatgagatgctgttcaggtgggctcctgatcgg
gtggaggtgctcagaaagttctgggaggattatgttctggtaatggagactctggaagaa
aaccagattcatgtagtccggccagttttaaacagaatcgacactctgattgaaactaca
gtaaacggttgccaaggctcggattgggggctcttccacccgtcctggctgttgtgtgtg
taccaccgcatgttccaaagtgagaacaaatccctcaccaaggaaggagtgtgtcatctg
gtggagctgcgggtcctgcagcatcctgcctttgcattatgcttttctcagttcatcgtt
ggtccgtttatggacgttctctccgaaacctcactttttcacaggtcacctggggaaaga
gtcggggagtgtccagagctggcggtgaagctcagagtcttcatggaaaccttcttcacc
agtttaccccaggaggagcgatgtgctgtgttgcttcagctcattcagcagctgagcact
aagcattggagtgcagtaccactcctcttcgtgtgcgagtcgctgtctcaacttcctctg
caacctctgctggggatcagcgggctcgccaccatcagggaggttctgcgatgcaccatg
atcacacatcaggtgctgctgagaggagctgcgcagtgtttcttgctcaagagcgccctc
tctctcacagtggtgagtgaagtaaccctggatgatgttttttctttcctggcgtgtttc
cgagcagatgagtctctgtgtagaggaacaaagctgtggaatcaagtgtgggcctggctt
ttaaaacacgaagacagttttaaatcaagaacgatcgacagagatttggatgctccccct
cgtaaaaaggaaacggtaaaaactcacgttcaagagacgttgctggcctttctcatggtg
ccagcgtgtatgggtcataatgaaaggctgcctgactccagagaggctgacaagctagcc
agagccgtcctgctgtgcgcggaaatgcagaggagtcgagcaggagcaggattaatcagc
tttctggactcgttgttgtctcccctgcttgacacgctgagccgagtcagcaccaatatg
taccagcctttgagcaagagcgacaagagcctgcagctcctacttaggttgttccagctt
gtagcaatcaatcagcgtgtccgcgtggaggaagatgatgtgctggttgccattagggga
atccttttccggctttttgatccagtcctggagtttatcctgcggcagctgtgtgggggg
ctgcaggagctttgtgacgtggagcgagcagatctctatctttgtgttctgaggcagctg
gttgtcgtgtgccgttcttcatcacaacaccacaataaaattcaccaaatagttttccct
aaactcatcaagtttggcctcacggctctaaagaaccaaacccatagggtccctttggtg
gcagatcaggttgctatggctgttgctatggcatccctggctactgtttgtgaccttaca
gcacaggaaggaactgacaatcaatcagaaaccagctccgctttgaaatcactgaacgac
tatttcttcagtccgacttcttcacagcatccgacctgtttgggacacatcaatcaacgg
ctcgtgaaaccacagctcatagactcttcaggctgtaatctggaagcacaagggattctg
cagcaggactggggactcattgccgccagattcatgcgagaccagtggatttgcctgaac
tttctttttaagacttttgggattcctgcgtcgacagctgacgccctccgagctgctttt
ctctgtgggctggaggccctgaccctgctccccagcgacctggtgctgcccgtcctcaca
ttcaatgagatggttttgccacaattggtatgcggcgaagaggcgctctgtgtgcaagca
gtgacttgtagttgggagctcgtgcaggggctgagcaccaacgctcacgacttctggcca
gcgctgagaggcttcgtttccatggcttttcagcacagcctgctcatcctccccaaggat
caggctccagacctcacggtcaccctgaaacaaattgcctctgaattattggagctgtct
cagacaaagagtggcgtgtatggcgtgctgactcagcactgctgccagacatggctggac
actgacgccgggtttacaagtgttttcagctacttggacatcgtcactgaagcttgtgtt
tacggacctttgatgaggaaagatcaacgactcattcaggatgtccacacatatgtggag
cagcttggggaatcatgtgctgctaatgtagcagttacaagtggtaccagggatgatcag
ttgccgcgcatttgcgtcctggctttcctcagccgcctggattccactaatgtgctgcac
caaagactcatagaggagcttgtttttgagttactgaagaaggacactgaaatatcaaag
tccaaaacgcgttaccatagcaactccctgcaacaccgtgttaaaaatagagtgtggcaa
acactactgatgctgatgcctaaactcaaagaggagtttgttggcgcgctgctgagccgc
gtgtttgaagccggattcggcagcaaccacgcctcagtaaaatacctgatcgagtggatg
atgattctgatcctcgtccgctgcccacaacacattgagagtttgtggatttgcttcagc
aagactcatgaacacaccaagaccagcatctgcaccttcttgtcagttctggtacatttt
aatgtcatcgttccacatcttaaggacaaggatgtgcagctccgtaaggcgctggatgtc
accctgcagtcgtgcctgagtcacaacttcagcgtccgcctctacgccttgttggcactg
aagagggtgtggcatctggcagaaaacatggcggaggaggccgaagctttgagatcgttg
tcctctgtggtcggcgtttgtctgacccaggcagaggccatgcagagcaccggaaatgct
agcaagaactggatacggattcaggagcacttctttttcagttgcttccatcccatcagg
gatttcagcattgagactattttctacaccttccctagtctgtcagagctgactgacgat
gagtggattccaccgtggaagtttgagaggtttgcagggtttgcagaaagctcagcgttt
cctttgaggaatgctgttcgcgacttggagcaggtccagcctggagactggattcagcag
gacagcagtgaacagggtaaggaggagcgctgggttgaggtgcagaagaagatcaccccg
tcgaggctgggaattcaggagcaggagcccgaacttcagctgattccgccccaaagggct
gcccgactgggcaaacagccgggggccctgctggttgtggcgtcactcatcgacaagcct
accaacttgggaggtctctgcaggacttgtgagatcttcggtgccagtgctctagtcctt
gacagcctccgccacgtcacggacaaacacttccagtcgctgagcgtctcctctgagctg
tggcttcctttgttagaggtgaagcccatggagctcacagaattcttgcagatgaagaag
agtgaaggttactgtattgttggagtggagcagacggccaacagtcaaagcctgcaggac
taccgcttccctgaaaagacactgctcctcctggggaatgagcgggaaggtatccctgct
aatttactccagatgctggacgtgtgtgtggagatccctcaacagggagtgatccggtcg
ctgaacgtgcacgtgagcgctgccctgttgatttgggaatacacccggcagcgtctgacc
tctaactctgtggaagttgccaacaaacatgagtttgtttga
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