Oryzias latipes (Japanese medaka): 101173980
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Entry
101173980 CDS
T02443
Name
(RefSeq) structure-specific endonuclease subunit slx1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
101173980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101173980
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101173980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
zf-HC5HC2H
zf-HC5HC2H_2
zf-RING_2
zf-4CXXC_R1
FANCL_C
T5orf172
Motif
Other DBs
NCBI-GeneID:
101173980
NCBI-ProteinID:
XP_004080126
UniProt:
H2MA56
LinkDB
All DBs
Position
18:complement(29946237..29949652)
Genome browser
AA seq
264 aa
AA seq
DB search
MVVEVESFFGVYMLYCRNPRFKGRIYIGFTVNPERRIGQHNAGRHRGGAKRTSGRGPWEM
VLIIHGFPSDIAALRFEWAWQHPHSSRRLPHVARRSRKESSLQFHWRVVSNMLRVAPWNR
LPLTARWLKQEYRMDFGPALQPPLHVPIAFGSVRAKKTLQPQTRAEEEEEETTDCFVCRR
PVKVSEKVSCLHASCGMSSHLICLGRRFLQSEPSQLLPVEGECPSCRRSLLWGSLIRHQL
GCLGDLEEVTEPSSQDHWADELQM
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtggaggtggagagtttctttggtgtgtacatgctgtactgcaggaatccacga
tttaaaggccgcatctacatcggcttcaccgtgaacccggaacggcggatcgggcagcac
aacgccgggcgacaccgcggtggggccaagaggaccagcgggagggggccatgggagatg
gtcctcatcatccacggctttccctccgacatcgccgctctcaggttcgagtgggcgtgg
cagcatccccactcctcccggcgcttgcctcacgtcgctcggcgctccaggaaagagtcc
agcttgcagttccactggcgcgtggtctccaacatgctgcgcgtggcgccgtggaaccgg
ctcccgctgacggcgcgctggctgaagcaggagtacaggatggactttggaccggctctg
cagcccccgctgcacgtccccatagcttttggaagcgtacgggccaagaagacgctgcag
ccgcagaccagagccgaggaggaggaggaggagaccaccgactgcttcgtctgcagacga
ccagtgaaggtatcggagaaggtgagctgtctccatgcgtcctgcgggatgagcagccat
ttgatttgcctcggcagacggttcttgcagtcggagccgtcccagcttctgcccgtggag
ggggagtgtccttcctgccggcgctcgctgctgtggggcagcctcattcgccatcagctc
ggttgcctgggagacctggaggaggtcacagaaccctcttcccaggaccactgggcggac
gagctgcagatgtga
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