Oryzias latipes (Japanese medaka): 101174262
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Entry
101174262 CDS
T02443
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101174262 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101174262 (edc4)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101174262 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
101174262 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
CelTOS
Motif
Other DBs
NCBI-GeneID:
101174262
NCBI-ProteinID:
XP_011474645
LinkDB
All DBs
Position
6:24348671..24373658
Genome browser
AA seq
1402 aa
AA seq
DB search
MSSSSNIDIEGATQHLRDILKLDRSGNGADAQSSDGLRAPSFNGELNGLLGAGLLGSSDQ
TTMSDSTRPISTDISSIQSSQIICLTGDDGSTCIPITSNNVEIVASEDSSINSKGRGSSK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIKGTNNHAMVRVLSLDFNERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTFTGNKILDQIVVHIQRPEDTPLNSHRRLIWC
PFIQDENEENQDDSSQTLALLHEDRAEVWDLEILRANISSWPVNATELKEGLITVKGHTQ
RVSEGALSPDGTVLATASHDGFIKFWQIYIEGGQDKPRCLHELQPHGGRPLSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKIWCTVSWTCLQTVRFCPDPFNLSVLPNLKANLDLSA
EYLILTDVQRKVLYVMELRQDLEKGKASFSAVSEFLLTHPVLSFGVRDVMLTRLRHTEVL
PAEEESESISTEGAQGPTESKSGIQIKLYCVHTKSLQDVQIWLQPNSCSGSAGFLPHSDS
QDGFARFSDHLTDHSSDKESGSGSQNDLRKIPSLPAPSDFLSNSAVVSGAMTKLMTPDAF
MTPSTSMPASPGSSASSLTIVTGTSSNSDSTNRSDSVLSDLTVLRAVDEVSQSPSRGDNG
GSGLGFSASSSSPRGASAVLMSGLENLQALSPPIGPLALDSPQPLDSPLLPPLTSPTRAR
SPDVISSASTAMTQDMPEIAQTLQLQRGFGASMEALPLPALQMDSMASAASALHLLTSPL
SANSSSLLQLELGGADGQSNAAESESRLSSTPSLLENALSHENSGATGGASDGNVSHTSW
PAAPDITRETRNSLRDNGLGDCSREESKDRRLSSPYHRHSYHLMQTDSQDAGAEQSDPDE
EVASLAASSGNCGSRSSHRISMKDWKSSPRGSPKLKRKMKKDDCESSQSRQLDSAQFNAE
TQNELLMLLRTQQRELSELWGVMEAMPGNIIAQVEHVMIKHQEQEHRRLERVLAESQNHQ
QQLHEQLSQQLSSALSSALSIRVDKVLREELKKTVPQTISKSLDPVTGQLNNTIAAKLTA
VDTTLRENVSKMVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQ
INDSFKQGTQEYIQQLEVHMKSRKQREQEARDPMVTQLQQMMDSFQRNTDQLASSISTTV
RSEVQHQMQMMVGNLQESILSHVQRIIKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPT
AHFDYQTQQANILQLLQQGQLNQAFQQALSATDLSLVLFVCETIDSQQVFGQHPCPLSQP
VLLSLIQQLSSNLATRTELKISYLEDAVMNLDHSDPLTRDHMASVLAQIRPKLIAFLQQD
PQNPLSKRARRLVMMLQGLVSH
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccagctctaatatagacatcgagggtgcgacccagcacctccgggatatcctc
aagctcgaccgttcgggaaacggcgccgatgctcagtcaagtgacggccttagagcgccg
tccttcaacggagagctgaatggtttgctgggagccggcctgctgggcagcagcgaccag
acgaccatgtctgactctaccagacccatttccacagacatcagcagcattcagagcagt
cagatcatctgtctcacgggtgacgacggctccacctgcatccccatcacctccaacaat
gtggagatcgtggcgagcgaagactccagcatcaacagcaaaggacgcggcagcagcaag
gttaagattcagcctgttgccaagtacgactgggagcacaaatattactacggcaggctg
atagcagtgtccaactccttcctggcctacgccatcaaaggaaccaacaaccacgccatg
gtccgggtgctgagtctggacttcaatgagcgctccttgctgaagggattcaccggagcc
gtcacggatctggcgttcgcccacctggactcatcgctgttgggctgcgttgatgaagcg
ggaaacctgatggtctggcagctcactttcaccggcaacaagattctagatcagatcgtg
gttcacattcagcggccagaagacactcccctcaactcccaccgtcgcctcatctggtgc
ccgttcattcaggacgaaaacgaggagaaccaggatgacagcagccagacgttggccctc
ctgcatgaagacagggctgaggtttgggacctggagatcctcagagccaacatcagcagc
tggcctgttaatgccacagaactcaaagaaggtctgattactgtcaagggtcacactcag
cgagtcagtgagggggcactgtctcctgatgggacagtgttggccacagccagccatgac
ggattcatcaaattctggcagatttacattgaaggaggacaggacaagcccaggtgtctt
cacgagctgcagccccatggggggcgtcccctctcctgccttctgttctgcgataaccat
aagaggcaggacccggaggttcctttctggcggttcctcatcaccggagcagaccagaac
caggagttgaaaatatggtgcactgtttcttggacctgcttacagacagtcaggttttgt
ccggatccatttaacttatcagttctgccaaatctcaaagccaatctggacctttctgct
gaatatctgatcctcactgatgtgcaaaggaaggttctgtatgtgatggagctgcggcag
gacctggagaaagggaaggcgagcttcagcgctgtttcagagttcctgctcacgcacccc
gtgctcagctttggggtccgggacgtgatgctcaccaggctgcgacacacggaggtcctc
cctgcagaggaggagagtgagagcatctccacagagggcgctcaggggcccacagagtcc
aagtctggaatccagattaaactctactgcgtccacacaaagagtttgcaggatgtgcaa
atctggcttcagccaaactcgtgctctggctctgcgggctttcttcctcattctgactcc
caggatggttttgccaggttttcggaccacctgaccgaccacagctctgacaaagagtct
ggaagcggctcgcagaatgacctgaggaagatcccgtcgcttccggctccatccgacttc
ctttcaaactcagcagtcgtcagcggagccatgacaaaactgatgacccccgacgctttc
atgacaccgagcacttcgatgccagcatctccgggcagcagcgccagcagcctgaccatt
gtgacaggaaccagcagcaactcggattccaccaacaggtcagactctgtcctttcagat
ctgactgttctgagagctgtggatgaagtcagtcagagtcccagcagaggagacaacggt
ggcagcggtttgggtttttctgcctcctctagcagtcccagaggagcttctgctgttctg
atgtctggattggagaacttacaggctttgtcacctcccattggtcctctggccctggac
agcccacagcccctggattctcccctgctgcctcctctgacctccccgaccagggctcgc
tcccctgacgtcatctcctccgcctccacggccatgacgcaggacatgccggagattgcg
cagaccctgcagctgcagcgcgggtttggggccagcatggaggccttacctcttcccgca
ctgcagatggacagcatggcctcagctgcctctgctctgcacctgctgacctccccgctc
tcggccaacagcagcagcttgctgcagctggaactgggaggtgccgacggacaaagcaac
gcagcagagtccgagtccagactcagcagcaccccgtctctcctggagaatgcgttatcc
cacgagaactccggagccacggggggagcttccgatggaaacgtcagtcacacatcctgg
ccagcggcgccagatatcaccagggagaccaggaacagcctgagggacaacggcctcgga
gactgttcaagagaggagtcaaaggacagacgcctgagctcaccttaccatcggcactcc
tatcacctgatgcaaacagacagtcaggacgctggtgcagagcagagtgaccccgatgaa
gaggtggcgagtctggcagcgtcttctggaaactgcggctctcgctcatcgcacagaata
tctatgaaagactggaagagctctccacgaggatcaccaaagctgaagaggaagatgaag
aaggatgactgtgaatcatctcagtctagacagctggattctgctcagttcaatgcagag
acacagaacgagttgctgatgctgctgcgcacccagcagagggagttaagtgaactgtgg
ggcgtgatggaggccatgccgggtaacatcatcgctcaggtcgagcacgtcatgatcaaa
caccaggaacaggagcaccgcagactggagcgggttttggcagagagtcagaatcatcag
cagcagcttcacgaacagctcagccagcagctgagcagcgccttgagctcggcactctcc
atccgagtcgacaaagtgctgcgggaggagctgaagaaaaccgttcctcagacaatttct
aagagcctggatccggtgacgggacagctgaacaacacaatcgctgctaagctaacggcc
gtggacaccaccttgagggagaacgtcagcaaaatggtcaaatcgaagaacacgacggat
gcaatcggccgagcggcagccgaggccatgcagggacccatccaggcagcctacaaagac
gccttccagagcatcgtgctgcctgtgtttgagcgcggctgccagtccatgtttcagcag
atcaatgacagtttcaagcaaggaactcaggagtacatccagcagcttgaggttcacatg
aagagcagaaagcagagggagcaggaggcccgggaccccatggtcactcagctccagcag
atgatggacagcttccagaggaacacggatcagctggccagcagcatcagcactaccgtt
cggtctgaggttcaacaccagatgcagatgatggtgggaaatctgcaggagtccattctt
agccacgtgcagcggatcatcaaaggcgaagtgagcctggccatgaaggagcagcaggcg
gtggtcacctccagcatcatgcaggccatgaggtcggcggccggaacgcccgtccccacg
gcgcacttcgactaccagacgcagcaggccaacatcctgcagctcctgcagcagggccag
ctcaaccaggccttccagcaggctctgtctgccaccgacctgagcctggttctgttcgtg
tgtgagaccatcgactcccagcaggtgtttggtcagcacccctgtccgctcagccagccc
gtcctgctgtcactcatccagcagctttcctccaacctggccacccgcactgagctcaaa
atcagctacctggaggacgcagtgatgaatctggaccacagcgaccccctgacccgtgac
cacatggcctccgtgctggcacagatccgacccaagctgatcgcgtttctgcagcaagac
ccccagaacccgctttccaagagggcgcggcgcctggtcatgatgctgcagggactcgtc
agccactag
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integrated database retrieval system
