Oryzias latipes (Japanese medaka): 101174440
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Entry
101174440 CDS
T02443
Symbol
vps50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101174440 (vps50)
Membrane trafficking [BR:
ola04131
]
Protein recycling
Others
EARP complex
101174440 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
101174440
NCBI-ProteinID:
XP_023815573
UniProt:
H2LGU1
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All DBs
Position
11:9999175..10125276
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AA seq
967 aa
AA seq
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MQKIKSLMARQGLKSPQESMAELSPVENLRIPSKEELRELRQQPIDPQAEQEIIDSIGEV
YFSNDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKRVADLILEKQPSYVKELE
RVTALQTNLQLAAVICTNARRQLNVAKAGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVLHYTKVQMAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLMDLCKALWEVMLSYHRTMQWHEEQDRQETTPPPDE
LAASKSDESIVDRSYVKKKLEHGLSRIWQDVQLKVKSYILGTDMSNFKFDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSVSPSRQAVSTSYAAQEDQSLFQQYVQDGNPFEMHIEEKEEETED
VLASNGYESDELEKSVYQEYDSDSDVPEELKQDYVDEQTGDAPLKSGSRDTIRSKRKSDY
CLNKANAPILTNTTLNVIRLVGKYIQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRN
DMYESSGLGLISSRLRTTLNRIQESLIDMDPVGENAGVHAPTEDRKEKVPSPHLSHLVVL
TNSETLYGLAQRVVATESLACLAELFESLQSHLDAMMPAAKKPFLQQFYSQTVSTASELR
KPIYWVVAAKAIDYEQMLLMMAGVKWDIREIMSQHNIYVDVLLKEFEQFNKRLGEVSRHV
RIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPI
PDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKRARQKLLAAID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtcacttatggcccgtcagggcctgaaaagtcctcaagagagcatg
gcagagctcagtcctgttgagaatttgagaatcccaagcaaggaggagttgcgggagctg
aggcagcagcccattgacccccaggctgaacaagaaatcatcgacagcattggggaggtc
tacttctccaatgactccttcgacatggtgcagcatgaactggagaaactcccaccagag
ctgaacttacaggagctggaggagtatagagataagcttaagagacaacaagcagcagtt
tctaaaagagttgccgatctcattctggagaaacagccttcctatgttaaggagctagag
agggtgacggcattacagaccaacctgcagctggcagcagtgatttgcactaacgcaaga
aggcaactcaacgtggcaaaagctgggtttacagaggccagcctgggtctgctagccaat
cagaggagacgacaactgctgacaggcttgctcaaatctctaaggaccatcaaaacattg
caaagaacagatgtaagactgagtgagatgctggaggaggaagactatccaggtgcaatc
cagctctgcctggaatgccaaaaggctgccagcaccttcaaacactacagctgcataagt
gaactgaattcaaagctacaagacactttagaacaaatagaggagcagcttgacgtcgcc
ctgtcgaagacttgtaagcactttgatgttttgcactacaccaaggtccagatggcctac
acactcctgggaaaaacacagaccgctatggaccagctacacatgcacttcacccaagcc
atccataacacggtgttccaagtggtgctggggtacgttgagctgtgtgccggcaatgct
gacaccaaattccagaagatgcagtacaaagacctgtgcacgcacatcacgcttgacagc
tacattccctgcctgatggatctttgcaaagctttgtgggaggtgatgctaagctatcac
cgcacaatgcagtggcacgaggagcaagacagacaggagaccacaccccctccagatgag
cttgcagcatcaaagtctgatgagtcgattgtggatcgtagctacgtcaaaaagaagttg
gagcacggactctcacggatctggcaggacgtccagctgaaagtgaagtcttacatcctg
ggaacggacatgtccaacttcaaatttgacgatttcatcgtggttctggacgtcatcagc
aggttgatgcaggttggtgaagagttctgtggcagcaagtctgaggtcctgcaggagtca
atcaaacgccagagtgttaactactttaaaaactatcacagagcacgtctggaggagttg
aggatgtttctggaaaatgagacgtgggagctttgtccagtcaagtccaactttaacatc
gcccagctccatgagttcaagttcatgggccagtgtcgctctccatccgtgtccccaagc
agacaggctgtttccacctcctacgcagcccaggaggatcagtctctgttccagcagtac
gtccaggacgggaacccctttgagatgcacatagaagagaaagaagaagagacggaggac
gtgctggcctctaatgggtatgagtcagatgagctggagaagagcgtgtatcaggaatac
gacagcgacagcgacgtccctgaggagctcaagcaggattatgttgacgagcagacaggt
gacgcccctctgaagagtggatcccgagacactataagaagcaagagaaagtctgactac
tgtcttaataaggcaaatgctccaatcctcaccaacaccaccctcaacgtcattcggctt
gtcggcaaatacatacagatgatgaacatcctcaaaccaattgccttcgatgtcatccac
tgtgtgtcgcagctctttgactactacctttacgctgtgtacaccttctttggacgcaac
gatatgtatgagtcatccggtctgggcctcatcagcagcagactgagaaccacactgaac
cggatccaagagagcctcattgacatggatcccgttggggagaacgcaggagtccacgcc
ccgacagaggacaggaaagaaaaggtgccgagcccccacctcagccatctggtggtcctc
acaaacagtgagaccctctatggcctggctcagagggtggtggccaccgagtctctagcg
tgtctggctgagctgttcgagtccctgcagtcgcatttggatgctatgatgcctgcagcc
aagaagcccttcttgcagcagttttattcccagacggtgtctacagccagcgagctgcgg
aagccaatctactgggtcgtggcagccaaggccatcgactacgagcagatgctgctcatg
atggccggagtcaaatgggacatcagagagataatgtcacagcacaacatatacgtagac
gtcctgttgaaggagtttgagcagtttaacaagcggctgggggaggtgtccagacacgtg
cgcatccccctgcccgtgtccaacgtcctgtgggagcactgcatccgcttggccaacagg
acactggtcgaaggatatgcgaatgtgaagaagtgcagtaacgagggccgggccctgatg
cagctggactttcagcagttcctgatgaagctggagaagctgacggacctgcggcccatt
cccgacaaggagtttgttgagacctacatcaaggcctattacctgactgaaaacgacatg
gagcagttcatcaagaaccacagggaatactccatgaaacagcttgccaacctggtaaac
gtgtgtctgggttcacatataaacaagagggctcgacagaaacttctagcagccatcgac
gacattgacagacccaagagataa
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