Oryzias latipes (Japanese medaka): 101174721
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Entry
101174721 CDS
T02443
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101174721 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101174721 (prpf4)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101174721 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_Vps41
Ge1_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_SPT8
WD40_like
Beta-prop_WDR11_1st
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
101174721
NCBI-ProteinID:
XP_004084617
UniProt:
H2MZD4
A0A3P9LCX4
LinkDB
All DBs
Position
12:5395..29581
Genome browser
AA seq
505 aa
AA seq
DB search
MSDEEDAVPVAKKSRVFYGSLEEKERERLSLQATGSDAVRAGIKAGNINISSGETLEIED
RVSERQQEVLAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSVL
SVVGPDALKKSRKDEDRARRSQEQCLQTWYHEGSASLKQARLWMARYSLPRAVARLEAAR
AQRDVSEANKTIQQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCKL
WSVPDCNLIRTLRGHNTNVGAIVFRPQSGVSLDQSDVNLASCAADGTVKLWNMESDEPVA
DIEGHSDRVSRVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLSFHPDG
SLVATGGLDSFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGHHLATGSGDNTCKVWELR
NRKCLYTVPAHQNLLSTVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKVMS
VDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaagaagatgcagttccggttgcaaagaaaagccgtgttttctacggaagc
ctggaggagaaggaacgtgaacgtctgagtctgcaggctacaggaagtgatgccgtgagg
gcggggattaaggctggaaacatcaacatttcctcaggggagactctggagattgaggat
cgagtcagcgagcggcagcaggaagtgctcgcagagttcgagcggcggcggcgagctcga
caaattacagtctccaccgacgatgcagaggtgaaggccggcctccgagcactgggggag
ccaatcacattgtttggagaggggccagctgaccgcagggagagattgcgaagtgttttg
tctgtggttggaccagatgccctaaagaagtccaggaaagacgaggacagagccagaagg
tcccaggaacagtgtctgcagacctggtatcatgaaggctccgcctccctaaaacaagct
cgactgtggatggccagatattctctgcctcgggccgtggctcgcctggaagctgctcgt
gcacagagagatgtttctgaggcaaacaagaccatacagcagcaggagctgcacaagagc
ctgaggaatctgaacaacttctgcagtcagattggtgatgatcggccaatcagcttctgc
cacttcagccccgactccaagatgttggccaccgcgtcctggagtgggctgtgtaagctg
tggtcagtccctgactgcaacctcattcgtacacttcgaggacacaacaccaatgtcggt
gccatcgtcttccgcccgcagtctggagtctctctggaccaatcagatgtcaatttggcc
tcatgtgctgctgatggaacagtcaaactgtggaacatggagagtgatgaacctgtggca
gacattgagggtcacagcgatagagtgtctcgagtggcctggcatccatctggaagattt
ttgggaacaacctgctacgataactcgtggcgtctgtgggacctagaggttcaggaggag
atcctccatcaggagggtcacagcaaaggagtccacgacctgagcttccaccctgatggc
tcgttggtagctactggagggttggattcttttggaagggtctgggacctgaggacagga
cgctgtgttgtcttccttgagggacacctgaaggagatctacagtctgcacttctctcct
aacgggcatcatctggcaacaggaagtggtgacaatacctgtaaggtttgggaactgcgc
aacaggaagtgtctgtacacagtcccagcccaccagaacctgctgtccactgtccgcttc
caacccacagacggtcactttctgttgactggagcttatgacaacacagcaaaggtttgg
agtcaccccggctggacaccgttgaagaccttggcaggacatgaggggaaggtgatgagc
gtggacgtgtcacctgacgggaagctgatagccaccagttcgtacgatcgaacgttcaaa
ctctggttgtctgagtga
DBGET
integrated database retrieval system
