Oryzias latipes (Japanese medaka): 101174755
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Entry
101174755 CDS
T02443
Name
(RefSeq) protocadherin-1 isoform X2
KO
K16498
protocadherin delta 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101174755
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101174755
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ola04515
]
101174755
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101174755
Cell adhesion molecules [BR:
ola04515
]
Cadherins
Protocadherins
101174755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
101174755
NCBI-ProteinID:
XP_011478896
LinkDB
All DBs
Position
10:29826559..29982145
Genome browser
AA seq
1214 aa
AA seq
DB search
MLSGEDMAVLRWGCLVLLTIVLMVPCGAVPSNNIYKLSEEQPPNTLIGSLAADLGLPDSG
HLYKLEVGSPYLRVDSKTGEIYTTEIPIDRETLSDCRNLFEDDKCFLEFEVSITDMVKGI
GLGPRLIEGIIEVLDINDNTPQFSSPILTLSIPENTHTGTLFSIPVAVDRDSGSNGVAEY
ALSAGPDANQLFGLQVAEDVDEKIPQVIVIGNLDREKKDSYDLNIRVVDGGKPPRASSAL
LRITVTDQNDNAPKFEKNQYEAELPENSPPGHSVLQVRANDADTGANGDIDYSLHQASDT
VQRLLRIDRSTGIIYVKGLVDREEDNLLKFYVVARDRGPNSKSSKAQVTISIKDQNDNAP
AIEIRGIGLVIHQNFVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPA
SESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDINDNTPS
FSPALLEVNFAEDNQPGDKVIDVVATDADSGVNAELVYSIIESSAASLFEINSNTGEIRV
RNQLDREDVERYEFGVAAADKGVPSKTGTAIVVINVEDRNDNDPKFMLSGYSFSVNENMP
PLNPVGVVTVSDADKGENSQVTLFVEPDNGKFIIQNGTGTILSSISFDREKESTYTFRLK
AVDAGDPPRSSYVGVTINVLDENDNAPYVTKPANSSYTHLKPSSPPDTPVEVVKAEDIDA
GVNAELYYTITGGNPHGLFQISHNSGEIKLAQGFTGKHKGLHRLVVRVSDKGKPPRHTTA
LVHVYVNETTNNVTLIEGLVGHSLYTPLDRDIAGDPNYDPAQRSNIVYGSLAGIAGVILI
IVAVVVIRYWLQNDTKSGYQAGKKENKDLYAPKQGPKNGKGKKSKKNKAPKQPKQLEEDE
EASLQKGFGFNHIKENINDSPRILLPLNRQPGSPDLGCHYRSNSPLPSIQLQPQSPSASK
KHLAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTSNQAQD
LQDASQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLR
PLPDVAMTGNCTRECTEFGHSDSCWMPGQPSPNHKVSKSAPKLSTFVPYQEMDGQEQLMA
NGSPKPVVTEERGGAGGSGSKVANMRFMTPYSSAYQGGGASSGKDRGLEEIPLSQAAEYH
SATTPTGQKREIYL
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgctgtccggtgaagacatggctgttctgaggtggggatgtctggtgctcctgaccatc
gtgctgatggttccttgtggcgccgttccctctaacaacatttacaaactgtctgaggag
cagccgcccaacacactgatcggcagtctggcagcggacctgggcctgcccgattccgga
cacctctacaaactagaagtgggttcgccatacttgagagtggacagcaagaccggtgaa
atctacaccacagagatccccatcgaccgagagactctgagtgactgccgcaacctgttt
gaagacgacaaatgcttcctagagtttgaggtgtcgatcacggacatggtgaaggggatc
ggcttgggtccgcggctgatcgaaggcatcatcgaggtgctcgatatcaacgacaacaca
ccgcagttctcctcgcccatcctcaccctctccatccctgagaacacgcacaccggcacc
ctcttctctatccccgtcgcagtggaccgggactcaggctccaacggcgtggctgagtac
gctctgagcgccggcccggacgccaatcagctctttggcctacaagttgctgaagatgtt
gatgaaaaaattccacaggtgattgtcatagggaacttggaccgggagaagaaggactcc
tatgacctgaacatccgagtggtggatggcgggaaaccaccgagggcaagcagcgcactg
ctgagaatcacagtgacggaccagaacgacaacgcgccaaagtttgagaaaaaccaatac
gaggctgagcttccggagaacagtccgcccggacactccgtgctgcaggtgagagccaac
gatgccgacactggtgccaatggagatatagactacagccttcatcaggcttccgacact
gtccagagacttctccgcattgaccgctccacaggcatcatctatgtcaaaggtctggtg
gacagagaggaggacaacttactcaagttttatgtggttgccagagatcgtgggccaaac
tccaagagttccaaggcacaggtgaccatcagtatcaaggaccaaaatgacaatgcacca
gccattgagattcgaggtattggtttggtaattcaccagaattttgtggccaacatctct
gaggacatgccaataggcaccccagtggcactggttcaagtgtctgaccgtgacgaaggg
gaaaacgcagtggtgacgtgcgtggtggctggagatgtgccgtttcagctccgacctgca
agtgagtcagccaacgatcgaaagaggaaatacttcttgcagacaacaaccctgctggat
tatgaacgcattaaggattacaggattgaaatagttgccgtggattctgggaacccagct
ctgtccagcaccaactcccttaaagtccaggtcacagacataaatgacaacacaccaagt
ttttctcctgcactgcttgaggtgaactttgcagaagataatcagcctggtgataaagtg
attgatgttgtggcaacagatgcagacagtggagtcaatgcagagctggtctacagcatc
attgagtcgtcggctgccagcctctttgagattaattccaacactggggagattcgggtg
aggaaccagttggatcgtgaagatgtggagcgttatgagtttggcgtggcagcagcggat
aagggtgttccaagtaaaactgggactgcaatagtggtgataaatgttgaagaccgcaac
gacaacgacccaaagtttatgctaagtggttacagtttctctgtcaatgagaacatgcct
ccactcaatcctgttggcgtcgttactgtcagtgatgccgataagggggagaattcccag
gtgacgctgtttgtggaaccagacaatggcaagttcatcatccaaaacggcacaggaacc
attctttccagcatttcttttgaccgggaaaaggaaagtacctacaccttccgtcttaag
gctgttgatgccggtgacccacctcgatcctcctatgttggtgtaactatcaatgtccta
gatgagaacgataacgccccctacgtcacgaaacctgccaactcatcctacacacacctg
aagccaagctccccgccagatactcctgttgaggtggtgaaagctgaggacattgatgct
ggagtcaatgctgagctgtattacaccataaccggagggaatcctcacggcctttttcag
atctcccacaacagcggagagatcaaactggctcagggattcaccggcaaacacaagggg
ctccaccgactcgtcgtgagagtcagcgataaaggcaagcctcctcgtcacaccaccgcc
ctcgtccacgtttatgtcaatgagaccacaaacaacgtgaccctcatcgaaggactggtt
ggccacagtctctacacgcctctggacagagacatcgctggagatcccaactacgaccct
gctcaacgaagcaacattgtgtatggcagccttgcaggtatagctggtgtgattctgatc
attgttgctgtggtggttatcagatactggctgcaaaacgataccaagagcggctaccag
gccggcaagaaggagaacaaagatctttatgctccaaagcagggtcctaaaaatggcaaa
gggaaaaagagcaagaagaacaaagctccaaagcagcccaagcagctggaggaagacgag
gaggccagcttacagaaaggctttgggtttaaccatatcaaagagaacattaacgacagt
cccagaatcctgctgcccctcaatcgccagccaggaagccccgatctaggctgccactac
cgctctaactctcccctgccatccattcagttgcagcctcagtcgccctctgcctccaag
aagcacctcgccgttcaggaccttcccgccaccaacaccttcgtaggaacaggcgacaac
aactccacaggctctgaccaatattcggattacagctacaaggccaatccgccaaaatac
agcaacaaacagctccctcaccgccgggtgaccttctccacgtccaatcaggcgcaggat
ctgcaggatgcgtcccagcacagctactacgacagcggcctggaggagtcggagaccccc
agctccaagtcgtcgtctgggccgcggatcgggcccctggctctgccggaggaccactat
gagaggaccacgcctgacggcagcatcggcgagatggaacacccggagaacgacctcagg
cctctccccgatgtggcgatgaccggtaactgcacccgcgagtgcaccgagttcggccac
tccgactcctgctggatgcccggccagccttcccccaaccacaaggtgtcaaagagcgcc
cccaagctctccaccttcgtgccttaccaggagatggacgggcaggagcagctgatggcc
aacgggagccccaagcccgtggtgacggaggagcgcggcggggctggcggcagcggctcc
aaagtggccaacatgaggttcatgacgccctacagcagtgcctaccaagggggcggggcc
tcctctggcaaagaccgtgggctggaggaaatcccactgagccaggcagcggagtaccac
tcagccaccacccccaccggccagaagagggagatctacctgtga
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